TABLE 2.
No. of alleles | No. of isolates with MIRU-VNTR locus
|
|||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | 4 | 10 | 16 | 20 | 23 | 24 | 26 | 27 | 31 | 39 | 40 | |
0 | 11 | |||||||||||
1 | 1 | 1 | 2 | 10 | 5 | 5 | 228 | 14 | 11 | 4 | 12 | 12 |
2 | 290 | 202 | 70 | 34 | 288 | 2 | 64 | 71 | 22 | 15 | 89 | 72 |
3 | 2 | 5 | 123 | 240 | 2 | 1 | 2 | 259 | 49 | 160 | 182 | |
4 | 18 | 70 | 9 | 15 | 10 | 1 | 66 | 31 | 24 | |||
5 | 43 | 14 | 217 | 38 | 154 | 1 | 2 | |||||
6 | 5 | 4 | 47 | 22 | 5 | 1 | ||||||
7 | 3 | 7 | 2 | 127 | ||||||||
8 | 3 | 6 | ||||||||||
9 | 1 | 2 | ||||||||||
10 | 1 | 1 | ||||||||||
12 | 1 | |||||||||||
1a | 1 | |||||||||||
3a | 3 | |||||||||||
5a | 1 | |||||||||||
Allelic diversityb | 0.02 | 0.50 | 0.71 | 0.31 | 0.03 | 0.42 | 0.35 | 0.73 | 0.21 | 0.64 | 0.60 | 0.54 |
The 53-bp unit at the 3′ terminus of locus 4 was absent.
Allelic diversity (h) was defined as h = 1 − Σ xi, where xi is the frequency of the ith allele at the locus (11).