Table 3.
Count and number of changes per genomic region in each genotype
| Region (alphabetical order) | 'Georgia Belle’ | 'Dr. Davis’ | 'F8,1-42’ | |||
|---|---|---|---|---|---|---|
| Count | Percent | Count | Percent | Count | Percent | |
| Downstream | 351,984 | 34.216% | 210,781 | 33.431% | 332,654 | 34.226% |
| Exon | 45,696 | 4.442% | 27,458 | 4.355% | 51,554 | 5.304% |
| Intergenic | 162,860 | 15.831% | 108,303 | 17.178% | 147,753 | 15.202% |
| Intron | 79,677 | 7.745% | 47,897 | 7.597% | 82,602 | 8.499% |
| Splice site acceptor | 191 | 0.019% | 121 | 0.019% | 183 | 0.019% |
| Splice site donor | 193 | 0.019% | 144 | 0.023% | 203 | 0.021% |
| Upstream | 382,086 | 37.142% | 231,850 | 36.773% | 349,884 | 35.998% |
| UTR-3′ | 3,863 | 0.376% | 2,430 | 0.385% | 4,602 | 0.473% |
| UTR-5′ | 2,168 | 0.211% | 1,504 | 0.239% | 2,507 | 0.258% |