Table 5.
Exclusive Structural Variants per genotype, their length, their type and the genomic region in which they occurred
| 'Dr. Davis’ | ||||||
|---|---|---|---|---|---|---|
| ID | Scaffold | Coordinates | SV Type | Length | Sequence | Gene or Repeat |
| 1495 | 1 | 13799591..13800210 | UnBal-Inv-Dup | 619 | Gene | ppb020139m.g |
| 16911 | 2 | 10443723..10444191 | UnBal-Inv-Dup | 468 | - | - |
| 17043 | 2 | 10707357..10707900 | UnBal-Inv-Dup | 543 | Repeat | Repeat_45491 |
| 19815 | 2 | 17082238..17082630 | Bal-Inv-Trans | 392 | Repeat | Repeat_50409, Repeat_50410, Repeat_50411 |
| 19815 | 3 | 5906870..5907047 | Bal-Inv-Trans | 177 | Repeat | Repeat_61206 |
| 20201 | 2 | 1815521..1816145 | UnBal-Inv-Dup | 624 | Repeat | Repeat_39494 |
| 23151 | 2 | 2648789..2649409 | UnBal-Inv-Dup | 620 | Repeat | Repeat_40108 |
| 23712 | 2 | 383807..384764 | Bal-Inv-Framt | 957 | Repeat | Repeat_38367, Repeat_38368 |
| 24146 | 2 | 4837884..4838548 | UnBal-Inv-Dup | 664 | Repeat | Repeat_41631 |
| 26318 | 3 | 1013398..1014058 | UnBal-Inv-Dup | 660 | Repeat | Repeat_57671 |
| 29142 | 3 | 18696965..18697347 | UnBal-Inv-Dup | 382 | Repeat | Repeat_70838, Repeat_70839 |
| 29263 | 3 | 19066495..19066675 | UnBal-Large-Dup | 180 | Repeat | Repeat_71125 |
| 29263 | 3 | 19068151..19068360 | UnBal-Large-Dup | 209 | Repeat | Repeat_71125 |
| 32395 | 3 | 8050690..8051662 | Bal-Inv-Framt | 972 | Repeat | Repeat_62915 |
| 43139 | 5 | 128216..128814 | UnBal-Inv-Dup | 598 | Repeat | Repeat_94279 |
| 46422 | 5 | 6900639..6900801 | UnBal-Trans | 162 | Repeat | Repeat_99387, Repeat_99388 |
| 46422 | 8 | 11283205..11283711 | UnBal-Trans | 506 | Repeat | Repeat_151873, Repeat_151874 |
| 52028 | 6 | 2620470..2620776 | UnBal-Trans | 306 | Repeat | Repeat_108508, Repeat_108509 |
| 52028 | 8 | 11283214..11283719 | UnBal-Trans | 505 | Repeat | Repeat_151873, Repeat_151874 |
| 58484 | 7 | 4749087..4750073 | Bal-Inv-Framt | 986 | Repeat | Repeat_130958 |
| 58485 | 7 | 4749430..4750258 | Bal-Inv-Framt | 828 | Repeat | Repeat_130958 |
| 63963 | 8 | 7122023..7122827 | Bal-Inv-Framt | 804 | mRNA | ppa026667m |
| 64422 | 8 | 9086244..9087200 | Bal-Inv-Framt | 956 | Repeat | Repeat_150549 |
| 'F8,1-42’ | ||||||
| ID | Scaffold | Coordinates | SV Type | Length | Sequence | Gen or Repeat |
| 20993 | 2 | 10443560..10444206 | Bal-Inv-Framt | 646 | - | - |
| 21986 | 2 | 12156442..12157007 | UnBal-Inv-Dup | 565 | Repeat | Repeat_46629, Repeat_46630 |
| 24536 | 2 | 16606936..16607425 | UnBal-Inv-Dup | 489 | - | - |
| 29055 | 2 | 2650281..2650575 | UnBal-Inv-Trans | 294 | Repeat | Repeat_49991, Repeat_49992 |
| 29055 | 3 | 15046335..15046888 | UnBal-Inv-Trans | 553 | Gene | ppa020237m.g |
| 30173 | 2 | 4307001..4307685 | UnBal-Inv-Dup | 684 | Repeat | Repeat_41315, Repeat_41316, Repeat_41317 |
| 33929 | 3 | 10480044..10480270 | UnBal-Inv-Dup | 226 | Gene | ppa011613m.g |
| 37571 | 3 | 19066494..19066675 | UnBal-Large-Dup | 181 | - | - |
| 37571 | 3 | 19068151..19068359 | UnBal-Large-Dup | 208 | Repeat | Repeat_71125 |
| 46467 | 4 | 19153499..19153637 | UnBal-Inv-Dup | 138 | Repeat | Repeat_86571 |
| 55460 | 5 | 10569336..10569979 | UnBal-Inv-Dup | 643 | EST | EST217 [GenBank ID: FE969391.1] |
| 55461 | 5 | 10569391..10570047 | UnBal-Inv-Dup | 656 | EST | EST217 [GenBank ID: FE969391.1] |
| 65545 | 6 | 19832212..19832895 | UnBal-Inv-Dup | 683 | Repeat | Repeat_121473, Repeat_121474, Repeat_121475 |
| 77074 | 7 | 4761867..4762779 | Bal-Inv-Framt | 912 | Repeat | Repeat_130964 |
| 77412 | 7 | 5482889..5483887 | Bal-Inv-Framt | 998 | EST | HPL-01-A08 [GenBank: DN552811.1] |
| 84240 | 8 | 5353089..5353931 | Bal-Inv-Framt | 842 | Repeat | Repeat_147771 |
| 'Georgia Belle’ | ||||||
| ID | Scaffold | Coordinates | SV Type | Length | Sequence | Gen or Repeat |
| 2525 | 1 | 1390693..1391565 | Bal-Inv-Framt | 872 | EST | PP_LEc0006H18f [GenBank ID: DW341826.1] |
| 32059 | 2 | 191135..192115 | Bal-Inv-Framt | 980 | EST | PP_LEc0012I17f [GenBank ID: DW342898.1] |
| 33996 | 2 | 22282633..22282891 | UnBal-Inv-Dup | 258 | Repeat | Repeat_53962 |
| 34581 | 2 | 23312824..23313409 | UnBal-Inv-Dup | 585 | Repeat | Repeat_54614, Repeat_54615, Repeat_54616 |
| 37966 | 2 | 4837563..4838555 | Bal-Inv-Framt | 992 | Repeat | Repeat_41631 |
| 49338 | 3 | 4508991..4509132 | UnBal-Inv-Trans | 141 | Repeat | Repeat_60164 |
| 49338 | 7 | 1525434..1525564 | UnBal-Inv-Trans | 130 | Repeat | Repeat_128579 |
| 57742 | 4 | 19154182..19154816 | UnBal-Inv-Dup | 634 | EST | AJ873513 [GenBank ID: AJ873513.1] |
| 69825 | 5 | 10568959..10570034 | Bal-Inv-Framt | 1075 | EST | EST217 [GenBank ID: FE969391.1] |
| 69826 | 5 | 10569191..10570123 | Bal-Inv-Framt | 932 | EST | EST217 [GenBank ID: FE969391.1] |
| 76451 | 5 | 6900036..6900768 | UnBal-Inv-Dup | 732 | Repeat | Repeat_99387, Repeat_99388 |
| 95603 | 7 | 22382739..22383456 | UnBal-Inv-Dup | 717 | Repeat | Repeat_143336 |
| 95633 | 7 | 22436698..22437437 | Bal-Inv-Framt | 739 | Repeat | Repeat_143367 |
| 96867 | 7 | 4749469..4750167 | UnBal-Inv-Dup | 698 | Repeat | Repeat_130958 |
ID identification number for each structural variant, SV Type Structural variant type, which includes UnBal-Inv-Dup Unbalanced Inverted Duplication, Bal-Inv-Trans Balanced Inverted Translocation, Bal-Inv-Framt Inversion of a genomic fragment, defined by balanced signatures, UnBal-Large-Dup Unbalanced large Duplication, UnBal-Trans Unbalanced Translocation, Sequence type of functional sequence, Length number of nucleotides rearranged in the sequence.