Table 2.
Summary of annotations of the P. bretschneideri unigenes
| Sequences (n) | Annotations (n) | Functional classification | |
|---|---|---|---|
| All assembled unigenes | 90,227 | - | - |
| Gene annotations against NR plant proteins | 61,624 | 29,942 | - |
| Gene annotations against NR Arabidopsis proteins | 27,152 | 36,977 | |
| Unique gene annotations against NR | 61,636 | 61,636 | |
| Gene annotations against UniProt | 40,796 | 40,796 | - |
| Gene annotations against InterPro | 32,098 | 56,450 | 4,264 domains/families |
| Gene annotations against Pfam | 30,985 | 37,194 | 3,406 domains/families |
| Gene annotations against COG | 17,008 | 33,205 | 25 categories |
| Gene annotations against KEGG | 31,215 | 31,215 | 121 pathways |
| GO annotations for NR protein hits | 132,166 | 98,774 | 3 main categories, 44 sub-categories |
| All annotated Unigenes | 62,077 | - | - |