Table 2.
Putative functions of genes included in the three orthologous groups shown in Figure4
| |
|
M. sacchariflorus
|
M. sinensis
|
|
||
|---|---|---|---|---|---|---|
| Groups | DN # | Leaf (AL) | Rhizome (AR) | Leaf (IL) | Rhizome (IR) | Putative functions |
| I |
DN551695 |
isotig00853 |
isotig08093 |
isotig00083 |
isotig03753 |
Polyubiquitin |
| |
DN552466 |
isotig05764 |
isotig07409 |
isotig05877 |
isotig08182 |
Serine-threonine kinase receptor-associated protein |
| |
DN552491 |
isotig03800 |
isotig03933 |
isotig09327 |
isotig06471 |
Heat shock protein 90 |
| |
DN552676 |
isotig01244 |
isotig07514 |
isotig10039 |
isotig01837 |
kh domain containing protein |
| |
DN552708 |
isotig05041 |
isotig04880 |
isotig07298 |
isotig07578 |
Catalase |
| |
DN552740 |
isotig04698 |
isotig00757 |
isotig03722 |
isotig02800 |
rna-binding protein |
| II |
DN551779 |
isotig00796 |
isotig01314 |
isotig01678 |
isotig04296 |
Amino acid expressed |
| |
DN551936 |
isotig05246 |
isotig06286 |
isotig03192 |
isotig09807 |
Actin |
| |
DN552433 |
isotig06434 |
isotig05172 |
isotig07270 |
isotig07933 |
at1g67350-like protein |
| |
DN552562 |
isotig01135 |
isotig05901 |
isotig08694 |
isotig08499 |
Poly -binding protein |
| |
DN552570 |
isotig06844 |
isotig02287 |
isotig05455 |
isotig11299 |
at5g02460-like protein |
| |
DN552671 |
isotig06879 |
isotig05162 |
isotig09810 |
isotig07725 |
Plasminogen activator inhibitor 1 rna-binding protein |
| |
DN552679 |
isotig02638 |
isotig06563 |
isotig01634 |
isotig00900 |
Acyl carrier protein 3 |
| |
DN552709 |
isotig03948 |
isotig03636 |
isotig02927 |
isotig02248 |
Ras-related protein rab11c |
| |
DN552742 |
isotig06246 |
isotig03810 |
isotig02007 |
isotig05233 |
No hits found |
| |
DN552766 |
isotig02679 |
isotig05804 |
isotig03934 |
isotig03115 |
Membrane protein |
| |
DN552772 |
isotig02777 |
isotig06530 |
isotig04172 |
isotig09766 |
S-adenosylmethionine decarboxylase |
| III |
DN551750 |
isotig02250 |
isotig03324 |
isotig02111 |
isotig04464 |
Dolichyl-diphosphooligosaccharide-protein glycosyltransferase |
| |
DN551751 |
isotig01665 |
isotig00318 |
isotig00973 |
isotig00230 |
40s ribosomal protein s14 |
| |
DN551768 |
isotig03736 |
isotig03218 |
isotig04157 |
isotig01466 |
No hits found |
| |
DN551788 |
isotig05403 |
isotig05029 |
isotig05339 |
isotig04880 |
Reversibly glycosylated polypeptide |
| |
DN551793 |
isotig00295 |
isotig00036 |
isotig00847 |
isotig00643 |
60s acidic ribosomal protein p1 |
| |
DN551798 |
isotig00508 |
isotig00357 |
isotig02756 |
isotig02156 |
nc domain-containing protein |
| |
DN551841 |
isotig07246 |
isotig06497 |
isotig04474 |
isotig10222 |
Maize proteinase inhibitor |
| |
DN551904 |
isotig03373 |
isotig04561 |
isotig01269 |
isotig04168 |
Ubiquitin-like protein smt3 |
| |
DN552392 |
isotig00059 |
isotig01841 |
isotig03321 |
isotig00727 |
No hits found |
| |
DN552427 |
isotig07628 |
isotig07842 |
isotig01782 |
isotig09528 |
atp synthase gamma |
| |
DN552437 |
isotig01515 |
isotig04375 |
isotig03437 |
isotig02624 |
Actin-depolymerizing factor 6 |
| |
DN552472 |
isotig01693 |
isotig01301 |
isotig00608 |
isotig00373 |
nac2 protein |
| |
DN552626 |
isotig01047 |
isotig00215 |
isotig00478 |
isotig04878 |
60s ribosomal protein l26-1 |
| DN552650 | isotig07218 | isotig06635 | isotig04233 | isotig03259 | 40s ribosomal protein s15a | |
Groups indicate the three topologies of phylogenetic trees described in the figure. DN numbers indicate the NCBI accession numbers of rhizome-enriched genes from S. halepense or S. propinquum. Putative functions were predicted based on the best blastx hits of rhizome-enriched genes from S. halepense or S. propinquum against the NCBI’s non-redundant protein database.