Table 5.
Benchmarking analysis
|
Data |
Method |
q |
|
Runtime seconds |
|
x-fold to Ref |
|||
|---|---|---|---|---|---|---|---|---|---|
| set | Ref | GT640 | C2075 | GT640 | C2075 | ||||
| |
RASCAL |
40 |
|
42 |
11 |
2.2 |
|
4 |
19 |
| |
NB |
40 |
|
8.8 |
1.4 |
0.3 |
|
6 |
29 |
| 2C9 |
PRW |
40 |
|
436 |
114 |
32 |
|
4 |
14 |
| |
NB |
175 |
|
8.2 |
1.3 |
0.3 |
|
6 |
27 |
| |
PRW |
175 |
|
7.0 |
31 |
3.6 |
|
0.2 |
2 |
| |
RASCAL |
40 |
|
57 |
15 |
3.0 |
|
4 |
19 |
| |
NB |
40 |
|
12 |
1.9 |
0.4 |
|
6 |
30 |
| 2D6 |
PRW |
40 |
|
727 |
157 |
44 |
|
5 |
17 |
| |
NB |
175 |
|
11 |
1.8 |
0.4 |
|
6 |
28 |
| |
PRW |
175 |
|
9.7 |
43 |
5.0 |
|
0.2 |
2 |
| |
RASCAL |
40 |
|
298 |
66 |
13 |
|
5 |
23 |
| |
NB |
40 |
|
55 |
8.3 |
1.8 |
|
7 |
31 |
| 3A4 |
PRW |
40 |
|
3,654 |
714 |
201 |
|
5 |
18 |
| |
NB |
175 |
|
53 |
8.1 |
1.8 |
|
7 |
29 |
| PRW | 175 | 45 | 197 | 23 | 0.2 | 2 | |||
Table shows the time taken in seconds and relative performance o the reference (Ref) to run all three classifiers over the three data sets using a scenario with bond depth of 6 (175 features) and j = 201 and q = 40. The reference is a single Intel Xeon E5506 at 2.13GHz. The number of vectors in data sets CYP 2C9, 2D6 and 3A4 are 2905, 3399 and 7294, respectively.