. Author manuscript; available in PMC: 2014 Jun 6.

Published in final edited form as: IEEE/ACM Trans Comput Biol Bioinform. 2011 Mar 16;9(1):294–304. doi: 10.1109/TCBB.2011.58

TABLE 4.

Nineteen Confirmed Genes for Breast Cancer in G2P

Gene	$INDEVI - F$	$INDEVI - G$	rank	percentile
KRAS	69	13974	2	0.11%
FGFR2	54	13817	6	0.33%
TWIST1	32	10978	7	0.39%
PTEN	24	11241	11	0.61%
MLH1	22	6592	16	0.94%
MSH2	22	6592	16	0.94%
TP53	20	6711	69	3.87%
PIK3CA	20	6698	73	4.04%
SLC22A18	18	6671	744	41.17%
PARK2	18	6622	745	41.23%
STK11	18	5198	746	41.28%
CTNNB1	18	3442	747	41.34%
AKT1	18	3428	748	41.39%
RAD54L	18	3415	749	41.62%
PPM1D	18	3415	749	41.62%
RB1CC1	18	3415	749	41.62%
BRIP1	18	3415	749	41.62%
CDKN2A	18	3221	749	41.67%
TIMP2	18	3195	749	41.73%