Table 1. Replicon copy numbers.
Replicon | Accession | Incompatibility/origin of replic. | Length (bp) | GC (%) | No. unique 21-mersa | Rel. mean coverageb | Std.Dev. |
Chromosome | CP006659 | oriC | 5435369 | 57.29 | 5328730 | 1.00 | 0.63 |
pNDM-US | CP006661 | IncA/C | 140825 | 51.92 | 135388 | 1.65 | 0.67 |
pKpn2146c | CP006663 | IncFIIA,IncFIB | 117755 | 51.21 | 111911 | 1.77 | 0.93 |
pKpn2146b | CP006662 | IncFIA,IncR | 85164 | 52.74 | 67233 | 2.00 | 1.08 |
pKpn2146a | CP006660 | ColE1 | 2014 | 49.60 | 1994 | 19.32 | 4.28 |
Unique 21-mers were identified for each replicon, and counted among MiSeq reads.
Mean 21-mer coverages were very similar to median values, and were normalized to that of the chromosome (which had 68.8 occurrences per 21-mer).