Table 3. Genomic islands.

Island	Chromosomal Coordinatesa	Length (bp)	att b	Kpn HSc	RNA gene target	Gene contentd	Additional supporte	Notef
Kpn21L	583102–604583	21482	Yes	No	tRNA-Leu	Restriction	Islander	Tandem with Kpn11L
Kpn11L	604583–615770	11188	Yes	Yesg	tRNA-Leu	Phage	Islander, PHAST	Damage; Tandem with Kpn21L; Enterobacteria phage P4
Kpn49R	1296810–1345944	49135	Yes	Alth	tRNA-Arg	Phage, gpII intron	Islander, PHAST	Cronobacter phage ENT47670
Kpn38RybB	1823069–1785570	37500	Yes	Yesi	RybB	Phage, gpII intron	PHAST	Enterobacteria phage Fels 2
Kpn29S	1966140–1994683	28544	Yes	No	tRNA-Ser	Phage	Islander
Kpn23SapB	2286456–2309756	23301	Yes	No	No	Phage, integron, gpII intron
Phast.2	2342484–2388101	45618	No	Yesj	No	Phage, gpII intron	PHAST	Salmonella phage Fels 1
Kpn40GuaA	3969748–4010194	40447	Yes	No	No	Phage, gpII intron	PHAST	Salmonella phage SPN1S
Kpn37X	4129454–4166020	36567	Yes	No	tmRNA	Phage	Islander, PHAST	Salmonella phage RE-2010; also called tmGI_Kp35 (JF764793)
Kpn55F	4603724–4658623	54900	Yes	Yesk	tRNA-Phe	T4SS, ParAB	Islander	Damage
Kpn16Fis	4919120–4935114	15995	Yes	Yesl	No	Phage	PHAST	Salmonella phage ST64B

^aIslands integrated into RNA genes are assigned the orientation of the target gene; remaining islands are arbitrarily assigned the genomic orientation.

^bPutative att sites identified at each flank.

^cStatus in the closely related K. pneumoniae HS11286 chromosome; No/Yes, absent/present in HS11286; Alt, alternative island in HS11286 at the Kpn2146 island site.

^dThe PHAST islands are strongly phage-like; we note where other islands have proteins suggestive of phage function, and other features of interest.

^eAll islands had phyloblocks support.

^fDamage denotes loss of an acceptor stem nucleotide in the tRNA gene fragment [31]; phage names are the closest relatives determined by PHAST.

^gCP003200.1/581777-594029; with IS903 inserted at position 4245 with 9-bp DR; directly at tRNA-Leu att site with no intervening Kpn21L.

^h50403-bp alternative island at CP003200.1/1288317-1338720 with same initial 1989 bp as Kpn49R.

ⁱCP003200.1/1778319-1808718; 2 mismatches; with 7201 bp deleted from peg.320 to 3′ end of gpII intron.

^jCP003200.1/2277469-2325549; with ISEc22 at position 15471 with 8-bp DR.

^kCP003200.1/4502805-4558770; with IS903B insert at position 9777 with 9-bp DR.

^lCP003200.1/4819193-4835187; no mismatches.