Table 2.
The root mean square deviation (RMSD) values of superimposed Ca-backbone atoms of the complete proteinase domain, and the β-strand IV-linker, the S-pocket, and the zinc binding sites of and Crotalus atrox atrolysins Ht-a, Ht-b, Ht-c, Ht-d, and Ht-eas compared to each other
Proteinases | RMSDa | RMSDb | RMSDc | RMSDd |
---|---|---|---|---|
Ht-a vs. Ht-b | 0.53 Å | 0.39 Å | 0.82 Å | 0.22 Å |
Ht-a vs. Ht-c | 0.56 Å | 0.44 Å | 0.62 Å | 0.33 Å |
Ht-a vs. Ht-d | 0.55 Å | 1.04 Å | 0.73 Å | 0.16 Å |
Ht-a vs. Ht-e | 0.60 Å | 1.14 Å | 0.33 Å | 0.24 Å |
Ht-b vs. Ht-c | 0.50 Å | 0.63 Å | 0.62 Å | 0.18 Å |
Ht-b vs. Ht-d | 0.48 Å | 1.07 Å | 0.48 Å | 0.23 Å |
Ht-b vs. Ht-e | 0.66 Å | 1.16 Å | 0.90 Å | 0.22 Å |
Ht-c vs. Ht-d | 0.54 Å | 1.08 Å | 0.75 Å | 0.18 Å |
Ht-c vs. Ht-e | 0.70 Å | 1.17 Å | 0.88 Å | 0.30 Å |
Ht-d vs. Ht-e | 0.55 Å | 0.60 Å | 0.75 Å | 0.28 Å |
Ht-a vs. AdII | 0.63 Å | 0.60 Å | 0.88 Å | 0.37 Å |
Ht-b vs. AdII | 0.70 Å | 0.62 Å | 0.68 Å | 0.38 Å |
Ht-c vs. AdII | 0.51 Å | 0.54 Å | 0.48 Å | 0.31 Å |
Ht-d vs. AdII | 0.71 Å | 1.11 Å | 0.40 Å | 0.35 Å |
Ht-e vs. AdII | 0.78 Å | 1.02 Å | 0.87 Å | 0.42 Å |
aComplete molecular structure RMSD values for Ca-backbone atoms
b β-strand IV-linker RMSD values for Ca-backbone atoms
c S-pocket RMSD values for Ca-backbone atoms
d Zinc binding site RMSD values for Ca-backbone atoms