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. 2014 Feb 13;40(2):193–216. doi: 10.1007/s10867-013-9339-3

Table 2.

The root mean square deviation (RMSD) values of superimposed Ca-backbone atoms of the complete proteinase domain, and the β-strand IV-linker, the S1-pocket, and the zinc binding sites of and Crotalus atrox atrolysins Ht-a, Ht-b, Ht-c, Ht-d, and Ht-eas compared to each other

Proteinases RMSDa RMSDb RMSDc RMSDd
Ht-a vs. Ht-b 0.53 Å 0.39 Å 0.82 Å 0.22 Å
Ht-a vs. Ht-c 0.56 Å 0.44 Å 0.62 Å 0.33 Å
Ht-a vs. Ht-d 0.55 Å 1.04 Å 0.73 Å 0.16 Å
Ht-a vs. Ht-e 0.60 Å 1.14 Å 0.33 Å 0.24 Å
Ht-b vs. Ht-c 0.50 Å 0.63 Å 0.62 Å 0.18 Å
Ht-b vs. Ht-d 0.48 Å 1.07 Å 0.48 Å 0.23 Å
Ht-b vs. Ht-e 0.66 Å 1.16 Å 0.90 Å 0.22 Å
Ht-c vs. Ht-d 0.54 Å 1.08 Å 0.75 Å 0.18 Å
Ht-c vs. Ht-e 0.70 Å 1.17 Å 0.88 Å 0.30 Å
Ht-d vs. Ht-e 0.55 Å 0.60 Å 0.75 Å 0.28 Å
Ht-a vs. AdII 0.63 Å 0.60 Å 0.88 Å 0.37 Å
Ht-b vs. AdII 0.70 Å 0.62 Å 0.68 Å 0.38 Å
Ht-c vs. AdII 0.51 Å 0.54 Å 0.48 Å 0.31 Å
Ht-d vs. AdII 0.71 Å 1.11 Å 0.40 Å 0.35 Å
Ht-e vs. AdII 0.78 Å 1.02 Å 0.87 Å 0.42 Å

aComplete molecular structure RMSD values for Ca-backbone atoms

b β-strand IV-linker RMSD values for Ca-backbone atoms

c S1-pocket RMSD values for Ca-backbone atoms

d Zinc binding site RMSD values for Ca-backbone atoms