Table 3. Performance of alignment algorithms for 8-way alignments of synthetic PPI networks (CG = crystal growth model, DMC = duplication-mutation-complementation model, DMR = duplication with random mutations model).

	CG			DMC			DMR
	SPE	CN	MNE	SPE	CN	MNE	SPE	CN	MNE
GASOLINE	94.52%	15359	0.044	87.29%	15735	0.097	88.6%	14842	0.092
SMETANA	82.93%	17489	0.114	83.89%	21976	0.102	88.7%	20315	0.081
NetworkBLAST-M	4.01%	5376	0.851	4.03%	5932	0.836	5.96%	6020	0.818
IsoRankN	32.09%	2433	0.485	51.74%	7112	0.305	50.84%	6677	0.305