Table 7. Performance of alignment methods for 4-way, 5-way and 6-way alignments of real biological networks (W = worm, F = fly, Y = yeast, H = human, M = mouse, R = rat).
W-H-M-Y | W-F-H-M-Y | W-F-H-M-R-Y | |||||||
SPE | CN | MGC | SPE | CN | MGC | SPE | CN | MGC | |
GASOLINE | 95.5% | 7954 | 0.861 | 94.82% | 9166 | 0.847 | 93.8% | 10385 | 0.822 |
SMETANA | 76.95% | 7913 | 0.653 | 75.19% | 9368 | 0.631 | 73.7% | 10677 | 0.612 |
NetworkBLAST-M | 63% | 4651 | 0.303 | 60.95% | 5343 | 0.268 | 51.62% | 5829 | 0.228 |