Table 12. Best 10 conserved complexes found by GASOLINE for the alignment of 25 vertebrata PPI networks.
| RANK | DESCR | SIZE | ISC | GOs |
| 1 | Protein serine/threonine kinase activity complex | 26 | 86.1% | 19 |
| 2 | Proteasome | 20 | 91.3% | 14 |
| 3 | Nuclear receptor DNA complex | 16 | 78.7% | 13 |
| 4 | Histone deacetylase complex | 14 | 85.4% | 14 |
| 5 | Vesicle-mediated transport | 13 | 86.5% | 10 |
| 6 | Cyclin-dependent kinase complex | 13 | 85.9% | 8 |
| 7 | Chaperonin-containing T-complex | 13 | 85.5% | 8 |
| 8 | DNA directed RNA polymerase II | 12 | 94.3% | 8 |
| 9 | Eukaryotic translation initiation factor 3 | 12 | 91.8% | 5 |
| 10 | Spliceosome | 11 | 92.6% | 5 |