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. 2014 May 20;111(22):E2251–E2260. doi: 10.1073/pnas.1322728111

Table 1.

Structural similarity between T. potens IscR and other winged-helix transcription regulators

Protein PDB ID code rmsd, Å No. of aligned Cα atoms Amino acid sequence identity, %* Z-score
B. subtilis CymR 2y75 1.5 119 55 17.2
E. coli IscR (unliganded) 4hf0 2.0 116 41 16.8
E. coli IscR (DNA complex) 4hf1 2.3 120 40 16.3
S. aureus CymR 3t8t 2.3 119 46 15.9
Putative transcriptional regulator from L. innocua 3lwf 3.8 124 48 14.9
B. cereus protein BC1842 1ylf 2.7 118 20 13.9

S. aureus, Staphylococcus aureus; L. innocua, Listeria innocua; B. cereus, Bacillus cereus.

*

Structure-based sequence alignment, as calculated by Dali server (http://ekhidna.biocenter.helsinki.fi/dali_server/start) (60).