Table 5.
Characterization of the 2,191 identified SNVs associated with 889 contigs
| Nucleotide variation | Number of SNVs | Nonsense | Number of associated contigs |
SNV position |
|||
|---|---|---|---|---|---|---|---|
| Coding sequence | UTR | Non coding sequence | |||||
| Exclusive to the RRIM600 library |
Non-synonymous |
339 |
20 |
161 |
326 |
13 |
0 |
| Synonymous |
141 |
|
99 |
98 |
27 |
16 |
|
|
Total |
480 |
|
260 |
424 |
40 |
16 |
|
| Exclusive to the RRIM600 OPS library |
Non-synonymous |
470 |
20 |
225 |
464 |
6 |
0 |
| Synonymous |
165 |
|
115 |
90 |
45 |
30 |
|
| Non-determined* |
31 |
|
22 |
- |
- |
- |
|
|
Total |
666 |
|
362 |
554 |
51 |
30 |
|
| Common for both libraries | Non-synonymous |
900 |
39 |
211 |
804 |
96 |
0 |
| Synonymous |
145 |
|
56 |
95 |
31 |
19 |
|
| Total | 1.045 | 267 | 899 | 127 | 19 | ||
* No CDS.