Table 2.

Polymerase chain reaction primers used to target bisulfite modified DNA in order to generate amplicons of the HPV16, 18, 31 and 45 L2 and L1 genes and the cellular DAPK genes, which bracket the CpG dinucleotides numbered in Figs. 1–4.

HPV16-5526F	AGTTCCAGGGTCTCCACAAT
HPV16-5730R	GTGCGTGCAACATATTCATCCG
HPV16-7094F	AAAGCTACACCCACCACCTCAT
HPV16-7443R	AAATGGGCCTGGCGCTACAAA
18mod7013-F	TAAATTTTTGGTTTAGGTTGGATTG
18mod7188-R	AAAACATACAAACACAACAATAAATA
Bis18-6118F	GGGTTAAAGGTATTGTTTGTAAAT
Bis18-6393R	AAAATACCTAACAAAAAACTACTCAC
31Bis-5475F	ATGGGGGTGATTTTTATTTGTATTT
31Bis-5771R	ACCCTATATTATAATCCTAACACCTTTAAT
31Bis-5801F	ATTTGGATTTTTTGATATATTTTTTTATAA
31Bis-6993R	CATTCCCTATTATCAATACCAAAAC
31Bis-6926F	AGATTTAGATTAGTTTTTATTGGGT
31Bis-7281R	AAATATATATAAAAACAACATACACAACAC
45Bis-4740F	GAGGTGTTTTAAATAGGGGAGGTAT
45Bis-5017R	ATCCAAAAACTCATAAACTAAATTATCAAA
45Bis-6965F	TTGATTTAAAGGAAAAATTTTTTTT
45Bis-7290R	ATAACACCATACATACCACAAAACAC
DAPK1-1	YGGAGGATAGTYGGATYTAGTTAA
DAPK1-2	ACRAAAACACAACTAAAAAATAAATAAAAAAC