Table 1. Expression abundance of all coding genes and polycistrons determined using RNA-Seq analysis.

Gene Namea	Start	End	Strand	Arbitrary Log Abundance	Gene Name	Start	End	Strand	Arbitrary Log Abundance
1 psbA	392	1450	Nb	12.93	psbB	71218	72744	P	14.08
1 trnK-UUU	1672	4266	N	6.90	13 psbT	72921	73028	P	1.85
1 matK	1972	3534	N	5.76	psbN	73089	73220	N	5.76
rps16	4834	5944	N	5.85	13 psbH	73308	73547	P	5.56
2 psbK	7380	7559	Pb	8.21	13 petB	73673	75022	P	8.88
2 psbI	7905	8066	P	5.18	13 petD	75216	76418	P	7.88
trnG-UCC	8923	9677	P	3.85	14 rpoA	76595	77602	N	5.76
3 atpA	10042	11565	N	9.67	14 rps11	77674	78090	N	6.44
3 atpF	11661	12913	N	7.96	14 rpl36	78200	78313	N	3.85
3 atpH	13187	13432	N	8.74	14 infA	78409	78642	N	5.18
3 atpI	14403	15146	N	5.66	14 rps8	78769	79173	N	5.94
4 rps2	15374	16084	N	7.02	14 rpl14	79363	79731	N	5.31
4 rpoC2	16293	20480	N	6.98	14 rpl16	79863	81143	N	7.06
4 rpoC1	20638	23451	N	7.69	14 rps3	81279	81941	N	6.66
4 rpoB	23478	26690	N	7.06	14 rpl22	81926	82393	N	6.31
5 trnC-GCA	27834	27904	P	1.70	14 rps19	82463	82741	N	3.85
5 petN	28061	28156	P	2.85	15 rpl2	82801	84283	N	9.38
psbM	29133	29237	N	4.85		149748	151230	P
6 trnD-GUC	29758	29831	N	1.85	15 rpl23	84302	84583	N	7.06
6 trnY-GUA	29942	30025	N	1.85		149448	149729	P
6 trnE-UUC	30097	30169	N	1.70	ycf2	84911	91762	P	7.38
7 psbD	32159	33220	P	14.92		142269	149120	N
7 psbC	33168	34589	P	13.64	16 trnL-CAA	92362	92442	N	1.70
7 psbZ	35262	35450	P	8.62		141589	141669	P	-
8 rps14	36188	36490	N	10.09	16 ndhB	93002	95155	N	12.80
8 psaB	36613	38817	N	12.50		138876	141029	P	-
8 psaA	38843	41095	N	12.58	16 rps7	95484	95951	N	12.59
ycf3	41886	43817	N	9.64		138080	138547	P	-
trnS-GGA	44634	44720	P	3.44	163′-rps12	96005	96785	N	10.72
rps4	44997	45602	N	6.66		137246	138026	P	-
9 trnL-UAA	46728	47267	P	5.02	17 rrn16S	98690	100180	P	18.34
9 trnF-GAA	47566	47638	P	2.85		133851	135341	N	-
9 ndhJ	48171	48647	N	6.94	17 trnI-GAU	100479	101490	P	13.16
9 ndhK	48758	49435	N	9.43		132541	133552	N	-
9 ndhC	49487	49849	N	8.90	17 trnA-UGC	101555	102422	P	13.82
trnV-UAC	50799	51447	N	5.66		131609	132476	N	-
10 atpE	51904	52305	N	5.66	17 rrn23S	102581	105397	P	18.79
10 atpB	52302	53798	N	9.76		128634	131450	N	-
rbcL	54563	56017	P	13.52	17 rrn4.5S	105497	105599	P	7.56
accD	56708	58195	P	8.57		128432	128534	N	-
psaI	58658	58768	P	1.85	17 rrn5S	105824	105954	P	2.85
ycf4	59224	59778	P	5.31		128077	128207	N	-
cemA	60326	61015	P	5.44	17 trnR-ACG	106188	106261	P	3.85
petA	61221	62183	P	6.66		127770	127843	N	-
11 psbJ	63245	63367	N	4.44	ndhF	108206	110422	N	7.85
11 psbL	63497	63613	N	6.56	rpl32	110875	111045	P	1.85
11 psbF	63637	63756	N	7.56	ccsA	111907	112884	P	2.85
11 psbE	63771	64022	N	9.60	18 ndhD	113116	114630	N	9.29
12 petL	64829	64924	P	1.70	18 psaC	114766	115011	N	5.31
12 petG	65103	65216	P	1.85	18 ndhE	115262	115567	N	6.76
psaJ	65939	66073	P	5.66	18 ndhG	115783	116313	N	7.88
rps18	66890	67195	P	2.85	19 ndhI	116689	117195	N	7.35
rpl20	67427	67813	N	4.18	19 ndhA	117276	119352	N	9.72
5′-rps12	68623	68736	N	1.85	19 ndhH	119354	120535	N	7.31
clpP	68860	70769	N	6.71	ycf1	121333	126849	N	4.66

^aThe superscript number in front of each gene name indicate the polycistron number.

^bN: negative; P: positive.