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. 2014 Jun 10;9(6):e99769. doi: 10.1371/journal.pone.0099769

Table 1. Primary sequence of the tested oligonucleotides and the predicted melting temperatures (Tm).

Modification Probe designation/Codon change Sequence Tm
LNA WT (CGC) 5′-CGCCAAGCGGCTCAT-3′ 68°C
R882C (CGC->TGC) 5′-CGCCAAGCAGCTCAT-3′ 66°C
R882H (CGC->CAC) 5′-CGCCAAGTGGCTCAT-3′ 66°C
R882P (CGC->CCC) 5′-CGCCAAGGGGCTCAT-3′ 67°C
R882S (CGC->AGC) 5′-CGCCAAGCTGCTCAT-3′ 66°C
BNA(NC) WT (CGC) 5′-CGCCA+AGCG+GCTCATGTT-3′ 70°C
R882C (CGC->TGC) 5′-CGCC+A+AGCAG+CTC+ATGTT-3′ 70°C
R882H (CGC->CAC) 5′-CGCC+A+AGTG+GCTC+ATGTT-3′ 70°C
R882P (CGC->CCC) 5′-CGCCA+AGGGG+CTCATGTT-3′ 70°C
R882S (CGC->AGC) 5′-CGCC+A+AGCTG+CTC+ATGTT-3′ 70°C

The character “+N” denotes the position of any BNA(NC) modified nucleotide. The positions of LNA modification are proprietary property of Exiqon, Denmark and are, therefore, not disclosed.