Table 4.
Perturbed pathways obtained by SPIA on MS data
| Name pathway | pSize | NDE | pNDE | tA | pPERT | pGFdr | Status |
|---|---|---|---|---|---|---|---|
| B cell receptor signaling pathway |
73 |
8 |
0.000 |
6.822 |
0.372 |
0.000 |
Activated |
| Fc gamma R-mediated phagocytosis |
89 |
4 |
0.015 |
-13.66 |
0.006 |
0.036 |
Inhibited |
| Salmonella infection | 71 | 5 | 0.001 | -4.901 | 0.174 | 0.041 | Inhibited |
pSize = number of genes in the pathway; NDE = number of DEGs in the pathway; pNDE = p-value of the enrichment; tA = total perturbation; pPERT = p-value of the perturbation; Status = direction of the perturbation.