Table 3. Semistatic GALA Analysis of Transmembrane Orientations of Peptides of the GWALP23 Familya.
DLPC |
DMPC |
DOPC |
||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
peptide | τ0 | ρ0 | Szz | RMSD (kHz) | τ0 | ρ0 | Szz | RMSD (kHz) | τ0 | ρ0 | Szz | RMSD (kHz) |
bW5 | 21° | 305° | 0.71 | 0.7 | 9 | 311 | 0.88 | 1.0 | 6 | 323 | 0.87 | 0.6 |
bY5 | 19 | 295 | 0.78 | 0.7 | 10 | 300 | 0.84 | 0.7 | 5 | 311 | 0.84 | 1.0 |
F5 | 21 | 310 | 0.58 | 1.1 | 7 | 330 | 0.85 | 0.6 | ||||
bY4,5 | 5 | 260 | 0.66 | 1.6 | 3 | 323 | 0.77 | 0.6 | 3 | 359 | 0.82 | 1.1 |
F4,5 | 21 | 317 | 0.67 | 0.6 | 6 | 332 | 0.92 | 0.9 | ||||
Y4 | 12 | 327 | 0.68 | 0.8 | 10 | 332 | 0.73 | 0.9 | 7 | 357 | 0.86 | 0.3 |
W5W18 | 19 | 40 | 0.78 | 1.5 | 12 | 265 | 0.74 | 1.3 |
The N-flanking aromatic residues are indicated by the abbreviation for each peptide. C-flanking W19 is also present in all samples except when the aromatic residues are W5 and W18.
Values from ref. (17).