Table 6.
Marker | Gene | Iowa case control | Italy case control | Colorado case control | Colorado discriminant score | ||||
---|---|---|---|---|---|---|---|---|---|
OR | p | OR | p | OR | p | Slope | p | ||
rs2328791 | N/A | 1.0 | 0.813 | 1.0 | 1.000 | 0.9 | 0.646 | 0.087 | 0.447 |
rs33914824a | DCDC2 | 2.2 | 0.034 | 0.9 | 0.768 | 1.1 | 0.847 | 0.023 | 0.934 |
rs807694a | DCDC2 | 1.9 | 0.028 | 0.9 | 0.786 | 0.9 | 0.853 | −0.025 | 0.919 |
rs707864a | DCDC2 | 1.6 | 0.017 | 1.0 | 0.840 | 1.2 | 0.446 | −0.246 | 0.101 |
rs10456301a | DCDC2 | 0.9 | 0.553 | 1.1 | 0.811 | 1.5 | 0.289 | 0.221 | 0.162 |
rs16889066a | DCDC2 | 1.2 | 0.517 | 1.0 | 0.884 | 1.2 | 0.622 | −0.304 | 0.150 |
rs9379651a | DCDC2 | 1.1 | 0.602 | 1.3 | 0.225 | 0.6 | 0.059 | 0.205 | 0.141 |
rs2817201 | KIAA0319 | 1.1 | 0.733 | 1.2 | 0.129 | 1.0 | 1.000 | 0.034 | 0.787 |
rs9295626 | KIAA0319 | 1.1 | 0.579 | 0.6 | 0.0055 | 1.0 | 0.823 | −0.158 | 0.169 |
rs10456309 | KIAA0319 | 0.5 | 0.073 | 0.7 | 0.189 | 0.4 | 0.206 | 0.628 | 0.0133 |
rs4576240 | KIAA0319 | 1.1 | 0.825 | 1.9 | 0.0027 | 1.1 | 0.862 | −0.052 | 0.754 |
rs17307478 | KIAA0319 | 1.0 | 0.996 | 1.3 | 0.292 | 0.8 | 0.555 | 0.039 | 0.803 |
rs9356939 | KIAA0319 | 4.0 | 0.018 | 0.8 | 0.069 | 1.3 | 0.151 | −0.116 | 0.254 |
rs7763790 | KIAA0319 | 1.0 | 0.831 | 1.1 | 0.627 | 1.4 | 0.163 | 0.014 | 0.910 |
rs6456621 | KIAA0319 | 2.2 | 0.019 | 1.6 | 0.405 | 1.8 | 0.366 | −0.458 | 0.104 |
rs3756821 | KIAA0319 | 1.2 | 0.278 | 1.0 | 0.842 | 1.2 | 0.327 | −0.033 | 0.734 |
rs1883593 | KIAA0319 | 1.3 | 0.169 | 1.6 | 0.0052 | 1.3 | 0.239 | −0.108 | 0.395 |
rs3212236 | KIAA0319 | 1.0 | 0.883 | 1.1 | 0.496 | 0.9 | 0.745 | −0.124 | 0.319 |
rs2294691 | TDP2 | 1.1 | 0.779 | 1.9 | 0.0578 | 1.4 | 0.491 | −0.290 | 0.247 |
rs3777663 | ACOT13 | 0.7 | 0.016 | 0.6 | 0.0052 | 1.0 | 0.908 | 0.101 | 0.345 |
rs3756814 | C6orf62 | 0.7 | 0.005 | 0.7 | 0.023 | 0.9 | 0.600 | −0.003 | 0.980 |
rs6931809 | C6orf62 | 1.4 | 0.023 | 1.4 | 0.017 | 1.2 | 0.491 | −0.096 | 0.382 |
rs6916186 | C6orf62 | 0.9 | 0.757 | 1.2 | 0.413 | 1.2 | 0.547 | 0.112 | 0.490 |
rs6933328 | C6orf62 | 0.9 | 0.612 | 0.9 | 0.613 | 1.0 | 0.827 | 0.215 | 0.0515 |
rs17491647 | C6orf62 | 0.8 | 0.155 | 0.7 | 0.104 | 1.0 | 0.901 | 0.042 | 0.709 |
rs9348646 | FAM65B | 0.9 | 0.358 | 1.1 | 0.535 | 1.4 | 0.144 | −0.415 | 0.00051 |
rs1562422 | CMAHP | 1.0 | 0.793 | 1.0 | 0.796 | 0.6 | 0.093 | −0.030 | 0.840 |
aThese markers are part of the six-marker risk haplotype in DCDC2 fully discussed in Powers et al. (2013)
Bold denotes nominally associated markers