Table 3.
Chromosome level breakdown of haplotype statistics
|
Chrom |
Number of clones |
Number of heterozygous. variants |
Fraction of heterozygous variants phased |
Number of contigs |
N50 Haplotype length |
|---|---|---|---|---|---|
| (BAC + CGI WGS) | |||||
| 1 |
6,892 |
148,691 |
0.973 |
219 |
2,166,488 |
| 2 |
7,632 |
156,474 |
0.978 |
195 |
2,905,522 |
| 3 |
6,677 |
147,498 |
0.985 |
146 |
3,015,997 |
| 4 |
6,937 |
159,704 |
0.982 |
106 |
4,113,256 |
| 5 |
6,101 |
127,746 |
0.983 |
117 |
2,700,783 |
| 6 |
5,818 |
142,863 |
0.981 |
119 |
3,005,140 |
| 7 |
4,781 |
113,746 |
0.974 |
150 |
2,621,008 |
| 8 |
4,589 |
98,664 |
0.982 |
114 |
2,413,181 |
| 9 |
3,485 |
80,480 |
0.966 |
125 |
2,276,528 |
| 10 |
4,104 |
99,111 |
0.969 |
109 |
2,264,959 |
| 11 |
4,233 |
90,557 |
0.979 |
113 |
3,368,062 |
| 12 |
4,150 |
93,795 |
0.979 |
116 |
2,641,808 |
| 13 |
3,395 |
75,463 |
0.984 |
51 |
2,945,506 |
| 14 |
2,846 |
62,844 |
0.967 |
69 |
3,059,729 |
| 15 |
2,520 |
55,794 |
0.967 |
71 |
2,067,670 |
| 16 |
2,031 |
59,080 |
0.956 |
123 |
1,252,516 |
| 17 |
1,965 |
47,238 |
0.96 |
116 |
1,485,600 |
| 18 |
2,547 |
56,853 |
0.981 |
43 |
3,345,667 |
| 19 |
1,155 |
32,849 |
0.956 |
110 |
660,242 |
| 20 |
1,649 |
39,551 |
0.958 |
66 |
1,608,505 |
| 21 |
1,170 |
34,095 |
0.958 |
36 |
3,226,907 |
| 22 |
768 |
19,020 |
0.956 |
65 |
1,057,117 |
| Total | 85,445 | 1,942,116 | 0.975 | 2,379 | 2,640,036 |
Abbreviations:BAC, bacterial artificial chromosome; Chrom, chromosome; CGI, Complete Genomics Institute; WGS, whole genome sequencing.