Table 1.
Species | Gene IDb | Gene name | Function |
---|---|---|---|
Conjugation | |||
S. meliloti | SMa0929 | traG | Conjugal transfer coupling protein TraG |
S. meliloti | SMa0934 | traA1 | Conjugal transfer protein TraA1 |
S. meliloti | SMa1302 | virB11 | Type IV secretion protein VirB11 |
S. meliloti | SMa1303 | virB10 | Type IV secretion protein VirB10 |
S. meliloti | SMa1306 | virB9 | Type IV secretion protein VirB9 |
S. meliloti | SMa1308 | virB8 | Type IV secretion protein VirB8 |
S. meliloti | SMa1311 | virB6 | Type IV secretion protein VirB6 |
S. meliloti | SMa1313 | virB5 | Type IV secretion protein VirB5 |
S. meliloti | SMa1315 | virB4 | Type IV secretion protein VirB4 |
S. meliloti | SMa1318 | virB3 | Type IV secretion protein VirB3 |
S. meliloti | SMa1319 | virB2 | Type IV secretion protein VirB2 |
S. meliloti | SMa1321 | virB1 | Type IV secretion protein VirB1 |
S. meliloti | SMa1323 | rctA | Negative transcriptional regulator of vir genes |
S. medicae | Smed_5050 | traD | Conjugal transfer TraD family protein |
S. medicae | Smed_5051 | traC | Conjugal transfer protein TraC |
S. medicae | Smed_5375 | traI | Acyl-homoserine-lactone synthase |
S. medicae | Smed_5377 | trbC | Conjugal transfer protein TrbC |
S. medicae | Smed_5387 | traR | Transcriptional activator protein TraR |
S. medicae | Smed_5388 | traM | Transcriptional repressor TraM |
S. medicae | Smed_5391 | traB | Conjugal transfer protein TraB |
Nitrogen metabolism | |||
S. meliloti | SMa0228 | gdhA | Glutamate dehydrogenase |
S. meliloti | SMa0581 | nrtC | Nitrate transport ATP binding protein |
S. meliloti | SMa0583 | nrtB | Nitrate ABC transporter permease |
S. meliloti | SMa0585 | nrtA | Nitrate ABC transporter substrate-binding protein |
S. meliloti | SMa0981 | ntrR2 | NtrR2 transcription regulator |
S. meliloti | SMc01521 | ntrR1 | Nitrogen regulatory protein |
S. medicae | Smed_1742 | fnrN | Nitrogen fixation regulatory protein |
Organic sulfur utilization | |||
S. medicae | Smed_1128 | ssuB-like | Aliphatic sulfonates import ATP-binding protein |
S. medicae | Smed_1129 | ssuA-like | Aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein |
S. medicae | Smed_1130 | atsA-like | Arylsulfatase |
S. medicae | Smed_3146 | atsA-like | Arylsulfatase |
S. medicae | Smed_3147 | ssuA | Aliphatic sulfonates family ABC transporter, periplasmic ligand-binding protein |
S. medicae | Smed_3148 | ssuB | Sulfonate ABC transporter, ATP-binding protein |
S. medicae | Smed_3150 | ssuC | Alkanesulfonate transport protein; membrane component |
S. medicae | Smed_3151 | tauC-like | Putative taurine transport system permease protein TauC |
S. medicae | Smed_2065 | atsA | Arylsulfatase |
Detoxification | |||
S. meliloti | SMb21552 | aacC4 | Aminoglycoside 6'-N-acetyltransferase |
S. meliloti | SMb20505 | tfxG | Trifolitoxin immunity protein |
S. meliloti | SMc02649 | arsC | Arsenate reductase protein ArsC |
S. meliloti | SMc02650 | arsH | Arsenical resistance protein ArsH |
S. medicae | Smed_0125 | aacA | Aminoglycoside N(6')-acetyltransferase type 1 |
S. medicae | Smed_2292 | aphE | Streptomycin 3''-kinase |
S. medicae | Smed_5053 | arsH | Arsenate resistance protein ArsH |
S. medicae | Smed_5054 | arsB | Arsenite resistance protein ArsB |
S. medicae | Smed_5055 | arsC | Arsenate reductase |
C1 metabolism | |||
S. meliloti | SMa0002 | fdoG | FdoG formate dehydrogenase-O, alpha subunit |
S. meliloti | SMa0005 | fdoH | FdoH formate dehydrogenase-O, beta subunit |
S. meliloti | SMa0007 | fdoI | FdoI formate dehydrogenase-O, gamma subunit |
S. meliloti | SMa0009 | fdhE | Formate dehydrogenase accessory protein FdhE |
S. meliloti | SMa0011 | selA | L-seryl-tRNA(Sec) selenium transferase |
S. meliloti | SMa0015 | selB | Selenocysteine-specific elongation factor |
S. meliloti | SMa0028 | selD | Selenide, water dikinase |
S. medicae | Smed_2095 | folD | Bi-functional; 5,10-methylene-tetrahydrofolate dehydrogenase and cyclohydrolase |
S. medicae | Smed_2096 | glyA | Serine hydroxymethyltransferase |
Sugars and polysaccharides | |||
S. meliloti | SMb20951 | exoI | Succinoglycan biosynthesis protein ExoI |
S. meliloti | SMb21416 | ddhA | Glucose-1-phosphate cytidylyltransferase |
S. meliloti | SMb21417 | ddhB | CDP-glucose 4,6-dehydratase |
S. meliloti | SMb21418 | NDP-hexose 3-C-methyltransferase | |
S. medicae | Smed_5910 | otsB | Trehalose-phosphate phosphatase |
Cellular processes | |||
S. meliloti | SMc03854 | ftsY | Putative cell division protein |
S. meliloti | SMc03044 | motD | Chemotaxis protein (motility protein D) |
S. medicae | Smed_1943 | ftsZ | Cell division protein FtsZ homolog 2 |
S. medicae | Smed_0273 | motD | Chemotaxis protein motD |
Others | |||
S. meliloti | SMc04203 | fecI | Putative RNA polymerase sigma factor FecI protein |
S. meliloti | SMc04204 | fecR | Putative IRON transport regulator transmembrane protein |
S. meliloti | SMc04205 | Putative IRON/HEME transport protein | |
S. medicae | Smed_2092 | dsdA | D-serine dehydratase |
S. medicae | Smed_3282 | fbpB | Ferric transport system permease protein FbpB |
S. medicae | Smed_3284 | fbpC | Ferric transporter subunit |
aAll genes are presented in Tables S3 and S4 in Additional file 1. bID of annotated gene in S. meliloti 1021 or S. medicae WSM419.