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. 2013 Dec 16;14(12):R136. doi: 10.1186/gb-2013-14-12-r136

Table 2.

Turtle transcriptomic sequence datasets analyzed in this study

Species Family Ind Tissue 454 Illu. Contigs a N50 ORF b Ref. c
C. nigra
Testudinidae
5
Blood
yes
yes
80,693
685
10,929
(1), (2)
C. carbonaria
Testudinidae
1
Blood
no
yes
11,324
536
1,236
(1)
M. leprosa
Geoemydidae
1
Blood
no
yes
10,199
576
1,439
(1)
E. orbicularis
Emydidae
10
Blood
yes
yes
68,096
720
10,503
(3)
T. scripta
Emydidae
3
Blood, brain
yes
yes
27,235
667
3,383
(3), (4)
C. caretta
Cheloniidae
1
Blood
yes
no
31,135
509
5,142
(2)
P. hilarii Chelidae 1 Blood yes no 45,060 563 8,066 (2)

aNumber of contigs of length >200 bp.

bNumber of ORF of length >100 codons.

c(1): this study; (2) Chiari et al. [22]; (3) Gayral et al. [23]; (4) Tzika et al. [24].