Table 1.

Coding single-nucleotide polymorphisms and small indels identified in the comparison between C57BL/6N and C57BL/6J

Chr	Position	B6J base	B6N base	Strain	Gene name	B6J amino acid	B6N amino acid
Nonsense polymorphism
13	65023280	C	T	B6N	Spata31	Arginine	*(stop)
Missense polymorphisms
1	59904011	G	A	B6N	Bmpr2	Arginine	Glutamine
3	95538799	T	C	B6J	Ecm1	Isoleucine	Valine
3	96658480	A	G	B6J	Pdzk1	Asparagine	Aspartic acid
4	21800831	C	G	B6J	Sfrs18	Arginine	Glycine
4	137777588	C	T	B6N	Hp1bp3	Leucine	Phenylalanine
4	140354038	A	G	B6N	Padi3	Leucine	Proline
4	148318468	T	C	B6J	Casz1	Leucine	Proline
5	90204376	C	T	B6N	Adamts3	Valine	Isoleucine
5	97187161	T	C	B6J	Fras1	Leucine	Proline
5	113191741	C	T	B6N	Myo18b	Arginine	Histidine
6	39350455	T	A	B6J	Mkrn1	Asparagine	Tyrosine
7	3222538	T	C	B6J	Nlrp12	Lysine	Arginine
7	63386662	G	A	B6J	Herc2	Glycine	Aspartic acid
7	86256240	A	C	B6J	Acan	Histidine	Proline
7	110121823	C	T	B6N	Olfr577	Valine	Isoleucine
7	127278693	G	A	B6N+Spretus	Zp2	Alanine	Valine
7	129311164	C	T	B6N	Plk1	Arginine	Tryptophan
9	24935069	C	G	B6N	Herpud2	Valine	Leucine
10	66700922	T	C	B6J	Jmjd1c	Leucine	Proline
10	78632222	A	G	B6N	Vmn2r80	Asparagine	Serine
10	87554578	T	C	B6N	Pmch	Isoleucine	Threonine
11	46036117	G	A	B6N	Cyfip2	Serine	Phenylalanine
11	90341985	C	T	B6N	Stxb4	Stxb4	Threonine
13	21560172	A	G	B6J	Nkapl	Glycine	Arginine
13	73465884	A	G	B6J	Ndufs6	Valine	Alanine
13	93833534	C	G	B6J	Cmya5	Alanine	Proline
14	70986011	G	T	B6N	Fam160b2	Serine	Arginine
15	11266138	G	T	B6N	Adamts12	Cysteine	Phenylalanine
15	77468437	A	C	B6J	Apol11b	Isoleucine	Arginine
16	35291630	G	A	B6N	Adcy5	Valine	Methionine
17	47537359	T	C	B6J	Guca1a	Isoleucine	Valine
X	131227581	C	A	B6N	Armcx4	Alanine	Aspartic acid
Splice site polymorphism
5	54280548	A	G	B6J	Tbc1d19	-	-
Frameshift 1 bp deletions
1	141133664	G	-	B6N	Crb1	-	-
9	65127938	G	-	B6J	Cilp	-	-

Abbreviations: Chr, chromosome.