Table 1.
Genus-level classification accuracy for three simulated metagenomes
| |
HiSeq |
MiSeq |
simBA-5 |
|||
|---|---|---|---|---|---|---|
| Classifier | Precision | Sensitivity | Precision | Sensitivity | Precision | Sensitivity |
| Megablast |
99.03 |
79.00 |
92.44 |
75.76 |
96.93 |
93.67 |
| NBC |
82.33 |
82.33 |
77.78 |
77.78 |
97.64 |
97.64 |
| PhymmBL |
79.14 |
79.14 |
76.21 |
76.21 |
96.11 |
96.11 |
| PhymmBL65 |
99.13 |
73.95 |
92.47 |
73.03 |
99.08 |
95.45 |
| Kraken |
99.20 |
77.15 |
94.71 |
73.46 |
99.90 |
91.25 |
| Kraken-Q |
99.12 |
76.31 |
94.69 |
70.41 |
99.92 |
89.54 |
| MiniKraken |
99.44 |
66.12 |
97.41 |
67.95 |
99.95 |
65.87 |
| MiniKraken-Q |
99.36 |
65.67 |
97.32 |
65.84 |
99.98 |
65.31 |
| Kraken-GB | 99.51 | 93.75 | 98.48 | 86.23 | 99.48 | 91.13 |