Table 2.
All candidate hnRNPLL-regulated splicing events prioritized for RT-PCR confirmation
| Gene | Intron location |
Feature scores |
Score | Rank | |||||
|---|---|---|---|---|---|---|---|---|---|
| 3′SS ratio | 5′SS ratio | Differential exon | Differential intron | Differential junction | Cryptic junctions | ||||
|
Ptprc |
1:140013603-140014330 |
1 |
1 |
1 |
1 |
1 |
1 |
6 |
1 |
|
Degs1 |
1:184207025-184208627 |
1 |
1 |
1 |
1 |
1 |
1 |
6 |
2 |
|
Ptprc |
1:140016744-140019032 |
1 |
1 |
1 |
1 |
1 |
0 |
5 |
3 |
|
Ptprc |
1:140012220-140013530 |
1 |
0 |
1 |
1 |
1 |
1 |
5 |
4 |
|
Ptprc |
1:140019162-140022879 |
1 |
0 |
1 |
1 |
1 |
0 |
4 |
6 |
|
Slc12a7 |
13:73870786-73901144 |
1 |
0 |
0 |
1 |
1 |
1 |
4 |
7 |
|
Slc12a7 |
13:73901339-73921966 |
0 |
1 |
0 |
1 |
1 |
1 |
4 |
8 |
|
Ptprc |
1:140014472-140016596 |
1 |
1 |
1 |
1 |
1 |
0 |
5 |
11 |
|
Rab3gap2 |
1:187087739-187090779 |
1 |
0 |
0 |
1 |
1 |
1 |
4 |
13 |
|
Il7r |
15:9440015-9440865 |
0 |
0 |
1 |
1 |
0 |
1 |
3 |
15 |
|
Ctse |
1:133535135-133558452 |
0 |
0 |
1 |
1 |
0 |
1 |
3 |
16 |
|
Sidt1 |
16:44258155-44259545 |
0 |
0 |
0 |
1 |
1 |
1 |
3 |
17 |
|
Il7r |
15:9438538-9439920 |
0 |
0 |
1 |
1 |
0 |
1 |
3 |
20 |
|
Il7r |
15:9438114-9438461 |
0 |
0 |
1 |
1 |
0 |
1 |
3 |
21 |
|
Ash1l |
3:88871164-88872908 |
0 |
1 |
0 |
1 |
0 |
1 |
3 |
23 |
|
Senp2 |
16:22032238-22036542 |
1 |
1 |
0 |
1 |
0 |
1 |
4 |
24 |
|
Rnf167 |
11:70463837-70464265 |
0 |
1 |
0 |
0 |
1 |
1 |
3 |
26 |
|
D14Abb1e |
14:28263236-28272964 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
33 |
|
Sept7 |
9:25104073-25105396 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
37 |
|
Mapkapk3 |
9:107166096-107182976 |
0 |
1 |
0 |
1 |
0 |
1 |
3 |
44 |
|
Trim68 |
7:109828211-109828650 |
1 |
1 |
0 |
0 |
1 |
1 |
4 |
48 |
|
Sigirr |
7:148281217-148286377 |
1 |
0 |
0 |
0 |
1 |
1 |
3 |
50 |
|
Trpv2 |
11:62388103-62389048 |
1 |
0 |
0 |
0 |
1 |
1 |
3 |
62 |
|
Herc3 |
6:58824395-58826482 |
1 |
0 |
0 |
1 |
0 |
1 |
3 |
66 |
|
Ighg2c |
12:114524254-114525607 |
0 |
1 |
1 |
1 |
0 |
0 |
3 |
71 |
|
Pik3r4 |
9:105580651-105584514 |
0 |
0 |
0 |
1 |
0 |
1 |
2 |
80 |
|
Ikbke |
1:133162866-133166377 |
0 |
0 |
0 |
1 |
0 |
1 |
2 |
83 |
|
Cep110 |
2:35013309-35015767 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
84 |
|
Fcrl1 |
3:87185307-87185682 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
87 |
|
Mllt6 |
11:97538551-97539627 |
0 |
0 |
0 |
1 |
0 |
1 |
2 |
104 |
|
Rap1gds1 |
3:138619284-138620373 |
0 |
0 |
0 |
0 |
1 |
1 |
2 |
131 |
| Lck | 4:129234700-129234869 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 163 |
Number of alternative splicing event types mapped within 1) all exons in expressed genes and 2) exons having at least 10% of intron retention in their 3′SS, and the mean number of the event types within randomly sampled exon sets of the same size.