Table 1.
Summary statistics of small RNA libraries
| Raw trimmed | Genome matched | ||||
|---|---|---|---|---|---|
|
Tissue or stress |
Code |
Abundance
a
|
Distinct
b
|
Abundance
c
|
Distinct
d
|
| Root |
BDI08 |
5,103,699 |
1,055,138 |
3,942,845 |
597,486 |
| Seedling |
OBD03 |
2,624,702 |
1,263,576 |
1,566,530 |
548,313 |
| Leaf 1 |
BDI04 |
5,207,568 |
1,425,013 |
4,305,921 |
959,519 |
| Leaf 2 |
BDI09 |
6,991,777 |
736,393 |
5,315,520 |
270,687 |
| Stem |
BDI06 |
3,855,537 |
1,926,121 |
3,209,322 |
1,435,137 |
| Leaf and stem |
OBD02 |
3,603,581 |
1,633,352 |
2,316,244 |
739,198 |
| Panicle 1 |
BDI05 |
4,944,182 |
2,166,081 |
4,102,150 |
1,567,160 |
| Panicle 2 |
OBD01 |
3,992,373 |
2,135,020 |
2,783,725 |
1,191,806 |
| Shoot control for stress |
BDI02 |
2,494,849 |
1,077,185 |
1,975,853 |
800,615 |
| Drought-stressed shoot |
BDI03 |
1,351,288 |
515,704 |
1,038,168 |
351,245 |
| Salt-stressed shoot |
BDI17 |
8,498,042 |
2,149,559 |
7,275,111 |
1,542,354 |
| Cold-stressed shoot |
BDI01 |
722,947 |
379,189 |
538,881 |
260,131 |
| Heat-stressed shoot |
BDI18 |
8,861,608 |
2,936,249 |
7,336,506 |
2,042,837 |
| Submergence-stressed shoot |
BDI19 |
9,421,125 |
4,336,814 |
7,586,861 |
3,037,780 |
| Shoot control for low phosphate |
BDI15 |
11,491,988 |
2,924,520 |
9,510,554 |
2,086,843 |
| Phosphate-starved shoot |
BDI16 |
12,405,206 |
2,977,218 |
10,490,572 |
2,153,426 |
| Pooled stresses |
OBD04 |
2,531,278 |
1,133,267 |
1,753,994 |
590,660 |
| Totale | 94,101,750 | 21,441,607 | 75,048,757 | 12,108,240 |
aRaw-trimmed abundance is the number of sequences obtained after trimming. bRaw-trimmed distinct is the number of different sequences. cGenome-matched abundance is the number of sequences that match perfectly to the genome. dGenome-matched distinct is the total number of different sequences that match to the genome. eThe totals of the abundance columns are sums and the totals of the distinct columns are unions (to give the number of non-redundant sequences).