Table 3.

Summary statistics of PARE libraries

		Trimmed		Genome matched		cDNA matched		cDNA loci g
Tissue	Code	Total a	Distinct b	Total c	Distinct d	Total e	Distinct f
Root	BDI20	10,748,481	2,342,429	9,279,374	1,605,048	4,298,418	1,021,275	22,762
Leaf	BDI21	13,772,836	1,238,807	12,266,285	684,817	4,930,319	391,613	20,333
Stem	BDI23	16,367,640	3,847,003	12,740,059	1,422,289	5,534,630	656,849	24,168
Panicle	BDI25	29,050,139	4,820,607	26,566,704	3,419,993	15,078,495	2,203,450	20,538
Total		69,939,096		60,852,422	5,202,600	29,841,862	3,165,429	25,129

^aThe total number of sequences obtained from a single run after trimming. ^bThe number of different sequences found in a set after trimming. ^cThe total number of sequences that match the genome at least once. ^dThe number of different sequences that match the genome at least once. ^eThe total number of sequences that match the sense strand of the coding sequence BdiCDSv1.2, the coding sequence minus UTR, at least once. ^fThe number of different sequences that match the sense strand of the coding sequence at least once. ^gThe total number of cDNA loci with at least one matching PARE sequence.

PARE, parallel analysis of RNA ends; UTR, untranslated region.