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. 2014 Mar 14;15(3):R51. doi: 10.1186/gb-2014-15-3-r51

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Copyright © 2014 Martin et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited.

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Transcripts enriched in the pull-down were enriched for centered sites as well as seeds. (A) The odds ratios from Fisher’s exact tests for an enrichment of transcripts with the indicated site type amongst the putative target set. Transcripts with multiple different types of site were excluded. (B,C) The coefficient estimates from logistic regressions of enrichment status on site count. Error bars indicate 95% confidence intervals. Tests were based on data from all 10 pull-downs combined. In (C), transcripts with multiple different types of site were excluded. CDS, coding sequence.