TABLE 2.
Structural statistics for the monomeric structure of JCV agnoprotein peptide
Parametera | Value for JCV agnoprotein peptide monomer |
---|---|
No. of restraints for calculation | 452 |
Unambiguous | 369 |
Ambiguous | 83 |
Total no. of NOE restraints | 452 |
Intraresidue | 293 |
Sequential (|i − j| = 1)a | 100 |
Medium range (|i − j| ≤ 4) | 59 |
RMSD structure statistics | |
Bonds (Å) | 2.7 × 10−3-2.93 × 10−3 |
Bond angles (°) | 0.44–0.50 |
Improper torsions (°) | 0.88–1.23 |
NOE restraints (Å) | 1.34 × 10−2-1.63 × 10−2 |
Final energies (kcal/mol) | |
Total | −1,146 to −998.6 |
Bonds | 4.42–5.21 |
Angles | 32.43–41.91 |
Improper angles | 9.78–17.38 |
Dihedrals | 164.5–167.86 |
van der Waals | −98.55 to −55.67 |
Electrostatic | −1,270.34 to −1,173.67 |
NOE | 4.08–5.98 |
Ramachandran plot of residues (%) in: | |
Most favored regions | 80.3 |
Additional allowed regions | 18.0 |
Generously allowed regions | 1.7 |
Disallowed regions | 0 |
Atomic RMSD (Å) on backbone atoms (K23 to F29) | |
Pairwise | 0.66 ± 0.22 |
To mean structure | 1.04 ± 0.15 |
j represents an amino acid different from amino acid i. Residues represented by i and j may be consecutive in the sequence or separated by 1, 2, or 3 residues.