FIG 3.

Phylogenetic analysis of RdRp amplicons obtained in this study and representatives of species in genera Alphacoronavirus and Betacoronavirus based on the maximum likelihood method. All sequences were classified into two groups: group Alphacoronavirus comprising 17 clades, and group Betacoronavirus comprising 10 clades. Clades containing approved species are in italics; clades containing unapproved novel species are marked with an asterisk. All amplicons in this study are marked as filled triangles, with previously reported bat CoVs as open triangles. Middle letters identify the viral host: H, human; C, civet; B, bat; Bo, bovine; M, murine; Ca, canine; F, feline.