TABLE 1.
Details of rectal swabs from bats and positive number of bats detected by nested RT-PCR
| Organism | Xiangyun |
Bingchuan |
Jinghong |
Baoshan |
Total |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. | No. (%) positivea | Cladeb | No. | No. (%) positivea | Cladeb | No. | No. (%) positivea | Cladeb | No. | No. (%) positivea | Cladeb | No. | No. (%) positivea | Cladeb | |
| Rhinolophus ferrumequinum | 15 | 0 | 32 | 2 (9) | αC | 30 | 1 (3) | αC | 77 | 3 (4) | αC | ||||
| Rhinolophus affinis | 11 | 2 (18) | β | 11 | 2 (18) | β | |||||||||
| Rhinolophus hipposideros | 4 | 4 | 1 (25) | αC | 3 | 11 | 1 (9) | αC | |||||||
| Myotis daubentonii | 22 | 2 (9) | αA/E | 64 | 5 (8) | αA/D/E | 86 | 7 (8) | αA/D/E | ||||||
| Myotis davidii | 83 | 11 (13) | αA/B/D/E | 83 | 11 (13) | αA/B/D/E | |||||||||
| Total | 120 | 13 (11) | αA/B/D/E | 100 | 7 (7) | αA/C/D/E | 34 | 2 (6) | αC | 14 | 2 (14) | β | 268 | 24 (9) | αA/B/C/D/E/β |
a
By nested RT-PCR.
b
Clade the amplicons clustered into. α, Alphacoronavirus; β, Betacoronavirus; A, myotis bat coronavirus 5; B, miniopterus bat coronavirus 1; C, hipposideros bat coronavirus HKU10-like; D, myotis bat coronavirus HKU6-like; E, myotis bat coronavirus 4.