Table 1.

Number of false differential expression genes predicted by each method at adjusted P values (or false discovery rate) ≤0.05 separated by gene read count quantiles.

Expression quantile	Cuffdiff	DESeq	edgeR	limmaQN	limmaVoom	PoissonSeq	baySeq
100% (high expression)	28	5	3	0	0	7	1
75%	76	6	0	0	0	0	0
50%	84	27	1	2	0	0	0
25% (low expression)	5	9	0	87	0	0	0
Total	193	47	4	89	0	7	1