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. 2014 Feb 25;15(2):R27. doi: 10.1186/gb-2014-15-2-r27

Table 3.

Genetic parameters between coding and non-coding regions for all three genes in the three countries

  Complete sequenced fragment (882 bp) Coding region (663 bp) Non-coding region (219 bp)
Gene
2n
S
h
hd
π
θ
D
D*
S
h
hd
π c
θ
D
D*
S
h
π nc
D
D*
Benin
24
1
2
0.08
0.09
0.3
−1.15 ns
−1.6 ns
1
2
0.08
0. 13
0.4
−1.15 ns
−1.6 ns
0
1
0


Cameroon
14
7
8
0.89
2.9
2.5
0.6 ns
0.21 ns
5
6
0.77
2.4
2.4
0.12 ns
−0.22 ns
2
3
4.2
1.3 ns
0.93 ns
Ghana
16
19
10
0.86
5.4
6.8
−0.8 ns
−0.38 ns
4
5
0.67
2.0
1.8
0.35 ns
0.25 ns
15
9
16
−1.1 ns
−0.55 ns
Mozambique
10
12
8
0.95
3.6
5.2
−1.4 ns
−1.4 ns
2
3
0.37
0.6
1.1
−1.4 ns
−1.6 ns
10
8
13
−1.3 ns
−1.25 ns
Malawi
18
14
7
0.78
4.4
4.6
−0.14 ns
1.14 ns
4
5
0.71
1.6
1.7
−0.28 ns
0.21 ns
10
6
13
−0.05 ns
1.41*
Uganda
10
17
9
0.97
7.5
6.8
0.5 ns
0.15 ns
3
4
0.71
1.7
1.6
−0.76 ns
−1.12 ns
14
7
26
0.72 ns
0.41 ns
Total 92 37 39 0.86 5.1 8.7 −1.3 ns −0.33 ns 13 16 0.73 2.3 3.8 −1.07 ns −0.8 ns 24 29 0.013 −1.3 ns −0.06 ns

2n, number of sequences; D, Tajima’s statistics; D*, Fu and Li’s statistics; h, number of haplotypes; hd, haplotype diversity; ns, not significant; π, nucleotide diversity multiplied by 103; S, number of polymorphic sites; θ, Watterson’s estimator (per site) multiplied by 103.