Table 3.
Computational target gene predictions
| DIANALAB microT v3.0 | PicTar | TargetScan | ||||||
|---|---|---|---|---|---|---|---|---|
|
miRNA |
Target gene |
Rank |
miTG score |
Precision |
SNR |
Target sites/genes found |
Score |
Aggregate P
CT
|
|
hsa-miR-96 |
SOX5 |
2 |
64.73 |
1 |
7.3 |
1214/763 |
6.74 |
0.94 |
|
hsa-miR-183 |
DUSP10 |
1 |
26.44 |
0.72 |
1.62 |
302/190 |
4.75 |
0.85 |
|
hsa-miR-302a |
NR4A3 |
27 |
19.86 |
0.84 |
6.22 |
863/473 |
3.05 |
NF |
|
hsa-miR-182 |
FOXN3 |
3 |
37.4 |
0.94 |
6.87 |
1358/794 |
NF |
0.96 |
|
hsa-miR-7 |
NR4A3 |
NF |
NF |
NF |
NF |
NF |
1.61 |
0.17 |
|
hsa-miR-7 |
FOXN3 |
7 |
14.08 |
0.17 |
1.03 |
399/136 |
NF |
0.88 |
|
hsa-miR-20a |
NR4A3 |
9 |
26.13 |
0.85 |
9.44 |
1650/841 |
5.87 |
0.63 |
|
hsa-miR-20b |
NR4A3 |
11 |
25.60 |
0.9 |
9 |
1955/973 |
5.87 |
0.63 |
|
hsa-miR-17 |
NR4A3 |
13 |
25.85 |
0.9 |
7.94 |
1928/961 |
5.38 |
0.63 + 0.37 |
|
hsa-miR-20a |
EIF4G3 |
3 |
55.29 |
0.97 |
9.44 |
1650/841 |
NF |
NF |
|
hsa-miR-20b |
EIF4G3 |
1 |
46.9 |
0.94 |
8 |
1955/973 |
NF |
NF |
| hsa-miR-17 | EIF4G3 | 1 | 46.87 | 0.94 | 7.94 | 1928/961 | NF | NF |
List of miRNA target-prediction mRNAs. MiRNAs, and target-predictive genes were identified by algorithms analysis by using Diana Lab, PicTar, and TargetScan. Scores (aggregate) are provided for each analysis.