Table 1.
Somatic variations in two GC tumors identified by whole genome sequencing approaches
| Patient ID | NGCII082 | NGCII092 |
|---|---|---|
| SNVs, all somatic | 14,856 | 17,473 |
| Coding regions | 119 | 116 |
| Non-synonymous | 86 | 73 |
| Promoter regions | 101 | 161 |
| Indels, all somatic | 11,738 | 2,486 |
| Coding regions | 12 | 2 |
| CNVs, all somatic | 836 | 21,776 |
| Affecting genes | 3 | 265 |
| SVs, all somatic | 12 | 146 |
| Affecting genes | 11 | 96 |
| Deletions | 6 | 56 |
| Tandem duplications | 2 | 8 |
| Unpaired inversions | 0 | 26 |
| Inversions | 0 | 2 |
| Insertions (intra-chromosomal) | 0 | 0 |
| Insertions (inter-chromosomal) | 0 | 0 |
| Isolated translocations | 0 | 3 |
| Balanced translocations | 0 | 0 |
| Complex events (intra- chromosomal) | 4 | 49 |
| Complex events (inter- chromosomal) | 0 | 2 |