Table 3. DEGs and highly expressed goosegrass transcripts related to ROS scavenging system.
| Gene ID | RPKM | Fold change | Homologous species | ||||||
| S0 | SQ | R0 | RQ | SQ/S0 | RQ/R0 | R0/S0 | RQ/SQ | ||
| Glutaredoxin, GLR | |||||||||
| comp15376_c0_seq1 | 1.29 | 14.44 | 2.24 | 10.85 | +3.48 | +2.28 | +0.80 | −0.41 | Brachypodium distachyon |
| comp26674_c0_seq1 | 5.33 | 25.47 | 4.43 | 31.31 | +2.26 | +2.82 | −0.27 | +0.30 | Sorghum bicolor |
| comp31422_c0_seq2 | 17.04 | 54.86 | 6.61 | 64.96 | +1.69 | +3.30 | −1.37 | +0.24 | Sorghum bicolor |
| comp18533_c0_seq1 | 7.88 | 17.38 | 6.96 | 21.07 | +1.14 | +1.60 | −0.18 | +0.28 | Sorghum bicolor |
| comp12002_c0_seq1 | 9.64 | 13.29 | 4.95 | 14.27 | +0.46 | +1.53 | −0.96 | +0.10 | Brachypodium distachyon |
| comp38421_c0_seq1 | 11.81 | 11.68 | 17.76 | 5.66 | −0.02 | −1.65 | +0.59 | −1.05 | Sorghum bicolor |
| comp23286_c0_seq1 | 12.73 | 1.05 | 2.49 | 2.09 | −3.60 | −0.25 | −2.35 | +0.99 | Zea mays |
| Monodehydroascorbate reductase, MDAR | |||||||||
| comp29012_c0_seq4 | 8.72 | 87.61 | 3.10 | 182.07 | +3.33 | +5.88 | −1.49 | +1.06 | Zea mays |
| Glutathione reductase, GR | |||||||||
| comp34945_c0_seq1 | 98.16 | 285.68 | 95.74 | 391.53 | +1.54 | +2.03 | −0.04 | +0.45 | Oryza sativa Japonica Group |
| comp31724_c0_seq5 | 3.35 | 7.08 | 2.96 | 10.39 | +1.08 | +1.81 | −0.18 | +0.55 | Oryza sativa Japonica Group |
| comp41205_c0_seq1 | 4.02 | 7.00 | 12.02 | 9.85 | +0.80 | −0.29 | +1.58 | +0.49 | Oryza sativa Japonica Group |
| Glutathione S-transferase, GST | |||||||||
| comp15320_c0_seq2 | 0.02 | 11.99 | 0.02 | 21.09 | +9.23 | +10.04 | 0 | +0.81 | Zea mays |
| comp26759_c0_seq1 | 0.04 | 12.94 | 0 | 23.28 | +8.34 | +0.85 | Zea mays | ||
| comp29100_c0_seq3 | 0.19 | 16.58 | 0.03 | 19.26 | +6.45 | +9.33 | −2.66 | +0.22 | Hordeum vulgare subsp. vulgare |
| comp18690_c0_seq1 | 1.47 | 30.41 | 0.91 | 52.89 | +4.37 | +5.86 | −0.69 | +0.80 | Sorghum bicolor |
| comp26545_c0_seq1 | 23.36 | 331.94 | 13.5 | 507.51 | +3.83 | +5.23 | −0.79 | +0.61 | Sorghum bicolor |
| comp35892_c0_seq1 | 7.41 | 83.19 | 5.11 | 100.99 | +3.49 | +4.30 | −0.54 | +0.28 | Sorghum bicolor |
| comp37758_c0_seq1 | 4.68 | 42.10 | 13.58 | 21.56 | +3.17 | +0.67 | +1.54 | −0.97 | Hordeum vulgare subsp. vulgare |
| comp19673_c0_seq1 | 39.56 | 255.53 | 18.43 | 270.78 | +2.69 | +3.88 | −1.10 | +0.08 | Triticum aestivum |
| comp29023_c0_seq11 | 2.54 | 15.43 | 1.11 | 24.72 | +2.60 | +4.48 | −1.19 | +0.68 | Zea mays |
| comp38536_c0_seq1 | 1.65 | 9.75 | 23.19 | 8.83 | +2.56 | −1.39 | +3.81 | −0.14 | Oryza sativa Japonica Group |
| comp27832_c0_seq2 | 3.77 | 20.63 | 0.27 | 29.32 | +2.45 | +6.76 | −3.80 | +0.51 | Sorghum bicolor |
| comp16427_c0_seq2 | 7.54 | 38.32 | 0.15 | 31.91 | +2.35 | +7.73 | −5.65 | −0.26 | Oryza sativa Japonica Group |
| comp30904_c0_seq5 | 5.97 | 26.37 | 1.89 | 20.79 | +2.14 | +3.46 | −1.66 | −0.34 | Brachypodium distachyon |
| comp17835_c0_seq1 | 10.42 | 42.08 | 11.14 | 88.12 | +2.01 | +2.98 | +0.10 | +1.07 | Sorghum bicolor |
| comp28455_c0_seq1 | 4.39 | 15.96 | 7.33 | 8.27 | +1.86 | +0.17 | +0.74 | −0.95 | Oryza sativa Japonica Group |
| comp35531_c0_seq1 | 23.26 | 83.60 | 42.07 | 57.04 | +1.85 | +0.44 | +0.85 | −0.55 | Zea mays |
| comp31694_c0_seq1 | 42.86 | 123.24 | 0.29 | 88.89 | +1.52 | +8.26 | −7.21 | −0.47 | Sorghum bicolor |
| comp32752_c0_seq3 | 4.82 | 13.80 | 0.88 | 27.31 | +1.52 | +4.96 | −2.45 | +0.98 | Sorghum bicolor |
| comp8070_c0_seq1 | 14.00 | 36.37 | 30.64 | 40.04 | +1.38 | +0.39 | +1.13 | +0.14 | Hordeum vulgare subsp. vulgare |
| comp8717_c0_seq1 | 14.41 | 37.40 | 24.8 | 22.02 | +1.38 | −0.17 | +0.78 | −0.76 | Zea mays |
| comp20535_c0_seq3 | 29.25 | 69.99 | 10.51 | 113.38 | +1.26 | +3.43 | −1.48 | +0.70 | Zea mays |
| comp26298_c0_seq1 | 16.71 | 37.74 | 9.97 | 66.50 | +1.18 | +2.74 | −0.75 | +0.82 | Zea mays |
| comp29106_c0_seq1 | 43.94 | 92.17 | 57.11 | 147.96 | +1.07 | +1.37 | +0.38 | +0.68 | Oryza sativa Japonica Group |
| comp30519_c0_seq2 | 33.13 | 50.58 | 22.87 | 50.24 | +0.61 | +1.14 | −0.53 | −0.01 | Cynodon dactylon |
| Peroxidases, POD | |||||||||
| comp23196_c0_seq1 | 1.81 | 23.47 | 1.34 | 19.85 | +3.70 | +3.89 | −0.43 | −0.24 | Hordeum vulgare subsp. vulgare |
| comp41522_c0_seq1 | 1.02 | 12.56 | 14.42 | 8.91 | +3.62 | −0.69 | +3.82 | −0.50 | Oryza sativa Japonica Group |
| comp33361_c1_seq2 | 6.84 | 52.06 | 15.37 | 70.43 | +2.93 | +2.20 | +1.17 | +0.44 | Sorghum bicolor |
| comp13511_c0_seq1 | 8.94 | 53.01 | 50.19 | 67.70 | +2.57 | +0.43 | +2.49 | +0.35 | Sorghum bicolor |
| comp29849_c0_seq2 | 5.16 | 23.55 | 12.51 | 7.88 | +2.19 | −0.67 | +1.28 | −1.58 | Sorghum bicolor |
| comp36428_c0_seq1 | 15.10 | 64.73 | 24.98 | 85.71 | +2.10 | +1.78 | +0.73 | +0.41 | Eleusine coracana |
| comp6539_c0_seq1 | 17.12 | 64.03 | 42.95 | 59.89 | +1.90 | +0.48 | +1.33 | −0.10 | Oryza sativa Japonica Group |
| comp33652_c1_seq12 | 3.69 | 9.26 | 1.75 | 14.01 | +1.33 | +3.00 | −1.08 | +0.60 | Sorghum bicolor |
| comp31277_c0_seq3 | 254.28 | 507.65 | 174.07 | 487.62 | +1.00 | +1.49 | −0.55 | −0.06 | Sorghum bicolor |
| comp14213_c0_seq1 | 61.08 | 2.22 | 23.54 | 3.10 | −4.78 | −2.92 | −1.38 | +0.48 | Zea mays |
| Catalase, CAT | |||||||||
| comp40218_c0_seq1 | 6.27 | 16.80 | 14.15 | 32.85 | +1.42 | +1.22 | +1.17 | +0.97 | Brachypodium distachyon |
| comp8916_c0_seq1 | 67.39 | 134.66 | 115.3 | 161.87 | +1.00 | +0.49 | +0.77 | +0.27 | Zea mays |
| comp37657_c0_seq1 | 17.67 | 29.26 | 18.88 | 48.77 | +0.73 | +1.37 | +0.10 | +0.74 | Brachypodium distachyon |
| comp34816_c0_seq1 | 695.16 | 1073.47 | 1654.64 | 644.10 | +0.63 | −1.36 | +1.25 | −0.74 | Zea mays |
| comp35271_c0_seq1 | 90.11 | 102.77 | 60.06 | 129.28 | +0.19 | +1.11 | −0.59 | +0.33 | Oryza sativa Japonica Group |
| Thioredoxin, Trx | |||||||||
| comp34820_c0_seq1 | 438.31 | 1133.65 | 319.84 | 1474.23 | +1.37 | +2.20 | −0.45 | +0.38 | Sorghum bicolor |
| comp24761_c0_seq1 | 48.66 | 71.98 | 37.84 | 85.03 | +0.56 | +1.17 | −0.36 | +0.24 | Zea mays |
| comp5507_c0_seq1 | 13.50 | 15.51 | 8.11 | 16.28 | +0.20 | +1.01 | −0.74 | +0.07 | Helianthus annuus |
DEGs and highly transcribed Transcripts was filtered using at least one RPKM values of Transcripts ≥ 10 among S0, SQ, R0 and RQ; and at least one absolute value of Fold Change ≥1 among SQ/S0, RQ/R0, R0/S0 and RQ/SQ. “RPKM” indicates RPKM values of Transcripts in S0, SQ, R0 and RQ. “Fold Change” equals to log 2 (A/B). “+” indicates up-regulated transcription and “-” represents down-regulated transcription. Homologous species is that identified from BLAST search of nr database using the cut-off E-value of ≤10−5.