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. Author manuscript; available in PMC: 2015 Jul 1.
Published in final edited form as: Proteins. 2014 Feb 18;82(7):1494–1502. doi: 10.1002/prot.24519

Table II.

Interaction geometries for methylammonium ions interacting with benzene, after constrained optimization using the aug-cc-pVTZ without f functions basis set and M06−2X functional. R refers to the distance between the ammonium nitrogen and the center of the benzene ring, θ refers to the angle between the ammonium nitrogen and the axial to the ring, and ϕ refers to where the cation is positioned with respect to the benzene hydrogen atoms.

Initial
Geometry
θ_ϕ
NH4+ CH3NH3+ (CH3)2NH2+ (CH3)3NH+ (CH3)4N+
R(Å) ϕ R(Å) ϕ R(Å) ϕ R(Å) ϕ R(Å) ϕ
0_0 2.9 - 3.0 - 3.0 - 3.0 - 4.2 -
30_0 3.4 5-10 3.5 20-25 3.5 25-30 3.5 25-30 4.3 0-5
30_30 3.5 10-15 3.4 5-10 3.5 5-10 3.6 25-30 4.4 0-5
60_0 4.1 25-30 4.2 25-30 4.1 25-30 4.2 25-30 5.1 25-30
60_30 4.1 25-30 4.2 25-30 4.2 25-30 4.2 25-30 5.2 25-30
90_0 4.4 25-30 4.4 25-30 4.6 25-30 4.6 25-30 8.0 15-20
90_30 4.4 25-30 4.4 25-30 4.6 25-30 4.6 25-30 6.4 25-30