Table 6.
Performance of docking model rankings according to ground truth criterion (DS93 dataset) based on average normalized χ 2
| Ground truth criterion |
Ranking method applied to DS93 |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| x-rmsd | Interfaces + PioDock | PrISE +PioDock | T-PioDock | IBIS +PioDock | IRAD | ZRANK | SPIDER | SVM | TSVM | MI | |
|
i-rmsd |
5.2 |
11.6 |
27.5 |
30.0 |
30.2 |
39.5 |
43.3 |
49.1 |
60.7 |
61.4 |
67.8 |
| l-rmsd | 6.0 | 12.5 | 27.0 | 29.7 | 33.5 | 39.5 | 44.2 | 50.6 | 63.9 | 64.5 | 70.9 |
In row denoted by i-rmsd and l-rmsd, rankings are compared against ground truth rankings generated by interface rmsd and backbone rmsd, respectively. x-rmsd refers to l-rmsd ranking for the first row and i-rmsd for the second row.