Skip to main content
. 2014 Mar 8;23(7):1771–1785. doi: 10.1007/s10531-014-0662-1

Table 3.

Overview of the multiple conditions used for the various PCR stages

Marker PCR 1 PCR 2 (touchdown)
Primers Conditions Primers Conditions
30×

nITS

Trebouxia

18S-ITS-uni-for

ITS4T

D 95° 00:30 ×35

ITS1aT

ITS4bT

D 95° 95° 95° 00:30 95° 00:30
A 56° 00:30 A 56° 55° 54° 00:30 53° 00:20
E 72° 00:40 E 72° 72° 72° 00:40 72° 00:40

cp-psbL-J

Trebouxia

psbF

psbR

D 95° 00:30 ×35

psbL-sense

psbJ-antisense

D 95° 95° 00:30 95° 00:30
A 50° 00:30 A 53° 52° 00:30 51° 00:20
E 72° 00:50 E 72° 72° 00:50 72° 00:50

nITS

Asterochloris

nr-SSU-1780-5′

ITS4

D 95° 00:30 ×35

ITS1-sense-A

ITS2-antisense-A

D 95° 00:30 ×35
A 55° 00:40 A 54° 00:30
E 72° 00:30 E 72° 00:40

Every PCR started with an initial denaturation at 95 °C for 2 min

D denaturation, A annealing, E extension