Table 3.

Diverse prokaryotic data: classification results

Conservation (mean bits/col)	Deterministic EM			SEAM			MITSU
	SSn	Sppv	AUC	sSn	sPPV	AUC	sSn	sPPV	AUC
0.99	0.75	0.67	0.99	0.86	0.86	—	0.88	0.92	1.00

Note: sSn, sPPV and AUC for nine datasets created using real prokaryotic data determined through ChIP experiments. Best results are printed in bold. In these tests, motif discovery was carried out only at the experimentally determined motif width.