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. 2014 Jun 11;30(12):i319–i328. doi: 10.1093/bioinformatics/btu291

Table 4.

Improvements to published genome

Contig set N contigs N50 N total basesa Average length Maximum length
All 1676 341 653 112 578 343 67 170 2 930 180
Extendable 462 448 682 57 574 961 124 621 2 930 180
Extendable + AlignGraph 368 837 458 62 216 675 169 067 3 168 537

The published scaffolds from Landsberg erecta were extended with AlignGraph using the A.thaliana genome as reference. The rows and columns are arranged the same way as in Table 2, but several columns are missing here because it is not possible to compute the corresponding performance measures in a meaningful manner without having access to a ‘true’ target genome sequence. aIn addition, we report here the total number of bases in the contigs.