Table 2. Assembly error and corrections.
| Standard Assembly | RPGC Assembly | |
|---|---|---|
| # pairs of candidate split loci | N/A | 31 |
| # pairs of candidate split loci with markers | N/A | 16 |
| # pairs of loci split | 9 | 9 |
| # pairs of loci correctly identified as split | N/A | 8 |
| Length of split loci in assemblya | 19,503 bp | 32,354 bp |
| Length of split loci corrected in assembly | 0 | 30,927 bp |
| # pairs of candidate collapsed loci | N/A | 69 |
| # pairs of loci collapsed | 44 | 68 |
| # pairs of loci correctly identified as collapsed | N/A | 68 |
| Length of collapsed loci in assembly | 73,693 bp | 156,468 bp |
| Length of collapsed loci reassembled in assembly | 0 | 19,505 bp |
a
The total single-locus length of loci confirmed as split into two loci. RPGC, recombinant population genome construction; N/A, not applicable.