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. 2014 Feb 13;4(4):681–692. doi: 10.1534/g3.114.010488

Table 1. Codon preference scores.

Codon Amino Acid Pref Score Codon Amino Acid Pref Score
GCC ala 0.571 CTG leu 0.697
GCG ala 0.076 CTC leu 0.316
GCT ala −0.401 TTG leu −0.434
GCA ala −0.491 CTA leu −0.443
CGC arg 0.501 CTT leu −0.458
CGG arg 0.163 TTA leu −0.572
CGT arg −0.090 AAG lys 0.700
AGG arg −0.188 AAA lys −0.700
CGA arg −0.279 TTC phe 0.534
AGA arg −0.471 TTT phe −0.534
AAC asn 0.461 CCC pro 0.425
AAT asn −0.461 CCG pro 0.211
GAC asp 0.392 CCT pro −0.404
GAT asp −0.392 CCA pro −0.442
TGC cys 0.304 TCC ser 0.287
TGT cys −0.304 AGC ser 0.270
CAG gln 0.656 TCG ser 0.228
CAA gln −0.656 AGT ser −0.297
GAG glu 0.724 TCT ser −0.351
GAA glu −0.724 TCA ser −0.456
GGC gly 0.430 ACC thr 0.435
GGG gly −0.083 ACG thr 0.204
GGT gly −0.222 ACT thr −0.357
GGA gly −0.291 ACA thr −0.416
CAC his 0.331 TAC tyr 0.421
CAT his −0.331 TAT tyr −0.421
ATC ile 0.584 GTG val 0.453
ATT ile −0.345 GTC val 0.245
ATA ile −0.405 GTA val −0.489
GTT val −0.492

Pref, preference.