Table 1. Codon preference scores.
Codon | Amino Acid | Pref Score | Codon | Amino Acid | Pref Score |
---|---|---|---|---|---|
GCC | ala | 0.571 | CTG | leu | 0.697 |
GCG | ala | 0.076 | CTC | leu | 0.316 |
GCT | ala | −0.401 | TTG | leu | −0.434 |
GCA | ala | −0.491 | CTA | leu | −0.443 |
CGC | arg | 0.501 | CTT | leu | −0.458 |
CGG | arg | 0.163 | TTA | leu | −0.572 |
CGT | arg | −0.090 | AAG | lys | 0.700 |
AGG | arg | −0.188 | AAA | lys | −0.700 |
CGA | arg | −0.279 | TTC | phe | 0.534 |
AGA | arg | −0.471 | TTT | phe | −0.534 |
AAC | asn | 0.461 | CCC | pro | 0.425 |
AAT | asn | −0.461 | CCG | pro | 0.211 |
GAC | asp | 0.392 | CCT | pro | −0.404 |
GAT | asp | −0.392 | CCA | pro | −0.442 |
TGC | cys | 0.304 | TCC | ser | 0.287 |
TGT | cys | −0.304 | AGC | ser | 0.270 |
CAG | gln | 0.656 | TCG | ser | 0.228 |
CAA | gln | −0.656 | AGT | ser | −0.297 |
GAG | glu | 0.724 | TCT | ser | −0.351 |
GAA | glu | −0.724 | TCA | ser | −0.456 |
GGC | gly | 0.430 | ACC | thr | 0.435 |
GGG | gly | −0.083 | ACG | thr | 0.204 |
GGT | gly | −0.222 | ACT | thr | −0.357 |
GGA | gly | −0.291 | ACA | thr | −0.416 |
CAC | his | 0.331 | TAC | tyr | 0.421 |
CAT | his | −0.331 | TAT | tyr | −0.421 |
ATC | ile | 0.584 | GTG | val | 0.453 |
ATT | ile | −0.345 | GTC | val | 0.245 |
ATA | ile | −0.405 | GTA | val | −0.489 |
GTT | val | −0.492 |
Pref, preference.