Table 1.

Viruses analyzed, PCRs assays, primers’ sequences, genome region and references.

Viruses and qPCR assay	Primers and probe	Sequences 5′ to 3′	Genome region	References
RV-A RT-qPCR	NSP3 F	ACCATCTWCACRTRACCCTCTATGAG a	NSP3	Zeng et al., 2008
	NSP3 R	GGTCACATAACGCCCCTATAGC
	NSP3 probe	VIC-AGTTAAAAGCTAACACTGTCAAA
HAdV qPCR	AQ1 F	GCCACGGTGGGGTTTCTAAACTT	Hexon	Heim et al., 2003
	AQ2 R	GCCCCAGTGGTCTTACATGCACATC
	Probe	FAM-TGCACCAGACCCGGGCTCAGGTACTCCGA-TAMRA
NoV RT-qPCR	COG2F	CARGARBCNATGTTYAGRTGGATGAGa	ORF1-ORF2 junction region	Kageyama et al., 2003
	COG2R	TCGACGCCATCTTCATTCACA
	RING2-probe	FAM-TGGGAGGGCGATCGCAATCT-TAMRA
HAV RT-qPCR	Forward primer	CTGCAGGTTCAGGGTTCTTAAATC	5′ non-coding region (NC)	Villar et al., 2006
	Reverse primer	GAGAGCCCTGGAAGAAAGAAGA
	Probe	FAM-ACTCATTTTTCACGCTTTCTG

^aIUB code: W = A/T, R = A/G, B = C/G/T, Y = C/T, N = A/C/G/T.