Skip to main content
. 2014 Jun 16;9(6):e98918. doi: 10.1371/journal.pone.0098918

Table 2. Genome proportions of repetitive sequences.

Genome
Repeat Lineage/class Clade alternative names EGIL MBEC MTEX MBAL MACU MORN DH pahang assembly* PKW assembly*
LTR retroelements Ty1/Copia Maximus-SIRE 4.277 14.860 17.744 16.388 19.483 21.794 12.26
Angela 5.765 8.354 8.797 5.088 4.471 4.800 4.81
Tork Tnt 1.313 1.513 1.517 .943 1.380 1.267 1.07
Ale Hopscotch .388 .728 .571 .358 .363 .409
Ivana .989 .315 .332 .191 .220 .230
TAR Tont .013 .040 .054 .049 .061 .072
Total Ty1/Copia 12.745 25.809 29.015 23.016 25.977 28.573 21.55
Ty3/Gypsy Chromoviruses Reina 3.057 4.081 3.935 3.022 5.189 4.612 2.57
Tekay .437 2.365 1.685 1.763 2.427 2.714 1.45
Galadriel Monkey 1.135 1.365 1.020 .585 .641 .536 0.68
CRM .358 .949 .877 .589 .567 .626 0.25
unclassified .262 .050 .000 .000 .000 .000
Tat 1.693 .260 .290 .010 .060 .047
Total Ty3/Gypsy 6.942 9.071 7.808 5.970 8.885 8.535 9.65
Other
pararetrovirus .000 .000 .000 .010 .023 .057
LINE .490 .790 .472 .492 1.214 1.120 5.41 0.39
DNA transposon .118 .281 .272 .269 .253 .224 1.24 0.17
Tandem Repeats rDNA 3.726 7.736 2.067 2.459 2.994 2.239
Satellites .005 .443 .122 .592 .247 .330 0.13
Annotated repetitive total 24.025 44.129 39.756 32.808 39.592 41.078
Unclassified repetitive 43.084 26.742 25.804 35.958 27.897 28.737
All repetitive total 67.109 70.870 65.560 68.766 67.489 69.815 26.85
unknown low copy 32.891 29.130 34.440 31.234 32.511 30.185

*Repeat proportion estimates from [20], [26].