Table 2.
Genome sequencing statistics of the entire PP1Y genome
| Chr | Mpl | Lpl | Spl | |
|---|---|---|---|---|
| Genome | ||||
| Size, bp | 3,911,486 | 1,161,602 | 192,103 | 48,714 |
| G + C content, % | 63.7 | 62.3 | 60.7 | 60.1 |
| Copies for each bacterial cell | 1 | 1 | 1 | 2 |
| ORFs | ||||
| Number | 3,481 | 975 | 199 | 54 |
| Minimum length, bp | 100 | 100 | 100 | 100 |
| Average length, bp | 990 | 1,059 | 788 | 776 |
| Maximum length, bp | 7,749 | 3,597 | 4,479 | 5,748 |
| ATG initiation codons, % | 86.8 | 88.4 | 76.4 | 81.5 |
| GTG initiation codons, % | 8.8 | 7.5 | 12.0 | 7.4 |
| TTG initiation codons, % | 4.4 | 4.1 | 11.6 | 11.1 |
| % of coding sequence | 88.1 | 88.9 | 81.6 | 86.0 |
| Repetitive elements | ||||
| Prophage elements | 5 | 1 | 1 | 1 |
| IS elements | 3 | 5 | 7 | 0 |
| RNAs | ||||
| rRNA (16S-23S-5S) | 3 | 0 | 0 | 0 |
| tRNAs | 58 | 0 | 0 | 0 |
| Other RNA elements* | 15 | 0 | 3 | 0 |
| Cobalamin riboswitches | 5 | 0 | 1 | 0 |
| suhB | 3 | 0 | 0 | 0 |
| SRP_bact | 1 | 0 | 0 | 0 |
| Rnase P clA | 1 | 0 | 0 | 0 |
| tmRNA | 1 | 0 | 0 | 0 |
| TPP riboswitch | 1 | 0 | 0 | 0 |
| ctRNA p42d | 1 | 0 | 0 | 0 |
| Glycine riboswitch | 1 | 0 | 0 | 0 |
| LR-PK1 | 1 | 0 | 0 | 0 |
| GroupII catalytic introns | 0 | 0 | 1 | 0 |
| ROSE | 0 | 0 | 1 | 0 |
*Predicted RNA elements, besides tRNAs and rRNAs.