Table 3.
Predicted protein genes comparison
| Total ORFs | ORFs in PP1Y replicons | |||||
|---|---|---|---|---|---|---|
| Genome | Replicon | Chr | Mpl | Lpl | Spl | |
| PP1Y | Chr | 3,481 | 3,481 | 203 | 30 | 4 |
| Mpl | 975 | 240 | 975 | 10 | - | |
| Lpl | 199 | 43 | 10 | 199 | - | |
| Spl | 54 | 5 | - | - | 54 | |
| N.aro | Chr | 3,324 | 1,741 | 296 | 43 | 22 |
| pNL1 | 182 | 203 | 32 | 8 | - | |
| pNL2 | 431 | 204 | 232 | 5 | - | |
| E.lit | Chr | 3,012 | 1,513 | - | - | - |
| S.ala | Chr | 3,166 | 1,536 | - | - | - |
| S.wit | Chr | 4,851 | 1,543 | - | - | - |
| Z.mob1 | Chr | 1,801 | 885 | - | - | - |
| Z.mobZ | Chr | 1,729 | 865 | - | - | - |
| S.jap | Chr1 | 3,530 | 1,573 | - | - | - |
| Chr2 | 590 | 234 | 147 | 0 | - | |
| pCHQ1 | 225 | 102 | 11 | 23 | - | |
| pUT1 | 45 | 8 | - | - | - | |
| pUT2 | 9 | - | - | - | - | |
N. aro = Novosphingobium aromaticivorans DSM 12444; E. lit = Erythrobacter litoralis; S. ala = Sphingopyxis alaskenis; S. wit = Sphingomonas wittichii; Z. mob = Zymomonas mobilis 11163; Z. mobZ = Zymomonasmobilis ZM4; S. jap = Sphingonium japonicum.
The protein-coding genes identified in PP1Y are compared with those of several genomes and plasmids.