Table 3.
Mobile genetic elements found in the genome of LMG 26808 (Based on the annotation results from IMG-ER, RAST and EDGAR)
| CDS identifiers | COG | COG annotation | Pfam | Position | Length (bp) |
|---|---|---|---|---|---|
| Cl_00892 | COG4974 | Site-specific recombinase XerD, phage_integrase | pfam00589 | Contig 3 (50199 to 51350) | 1152 |
| Cl_00935 | COG4974 | Site-specific recombinase XerD, phage_integrase | pfam00589 | Contig 5 (8554 to 9540) | 987 |
| Cl_01562 | COG4974 | Site-specific recombinase XerD, phage_integrase | pfam00589 | Contig 5 (682570 to 683556) | 987 |
| Cl_01811 | COG1842 | Phage shock protein A (IM30), suppresses sigma54-dependent transcription | pfam04012 | Contig 5 (938633 to 939376) | 744 |
| Cl_01968 | COG3600 | Uncharacterized phage-associated protein | pfam13274 | contig 7 (7492 to 7956) | 753 |
| Cl_03043 | COG4679 | Phage-related protein | pfam05973 | contig 15 (974 to 1303) | 330 |
| Cl_03056 | COG4974 | Site-specific recombinase XerD, phage_integrase | pfam00589 | contig 15 (22760 to 23485) | 726 |
| Cl_03252 | COG4974 | Site-specific recombinase XerD, phage_integrase | pfam00589 | contig 46 (189 to 866) | 678 |
| Cl_02713 | COG2452 | Predicted site-specific integrase-resolvase | pfam12728 | contig 11 (350076 to 350522) | 447 |
| Cl_03047 | COG2801 | Transposase and inactivated derivatives, Tnp1, IS3_IS150 | pfam01527 | contig 15 (9545 to 11077) | 1533 |
| Cl_03189 | - | Transposase DDE domain, Tnp1, IS1380 | pfam01609 | contig 28 (1417 to 2532) | 1116 |
| Cl_03190 | COG4644 | Transposase and inactivated derivatives, TnpA family, Tn3 | pfam01526 | contig 28 (4206 to 5753) | 1530 |
| Cl_03209 | COG4644 | Transposase and inactivated derivatives, TnpA family, Tn3 | pfam01526 | contig 33 (10984 to 12801) | 1818 |
| Cl_03210 | COG3316 | Transposase and inactivated derivatives, IS6 | pfam13610 | contig 33 (12848 to 13552) | 705 |
| Cl_03211 | COG2801 | Transposase and inactivated derivatives, IS3_IS150 | pfam13276 | contig 33 (14010 to 13498) | 513 |
| Cl_03212 | COG2963 | Transposase and inactivated derivatives, Tnp1, IS3 | pfam01527 | contig 33 (14489 to 14343) | 147 |
| Cl_03214 | COG3316 | Transposase and inactivated derivatives, IS6 | pfam13610 | contig 34 (391 to 116) | 276 |
| Cl_03235 | - | Transposase, Tnp1, IS5_IS903 | pfam13737 | contig 39 (1373 to 2212) | 840 |
| Cl_03261 | - | Transposase DDE domain, Tnp1, IS4 | pfam01609 | contig 51 (1 to 1188) | 1188 |
| Cl_03204 | - | Mobile element protein | - | contig 33 (530 to 366) | 165 |
| peg.1244 | - | Mobile element protein | - | contig 28 (149 to 742) | 594 |
| Cl_03063 | - | Mobile element protein | - | contig 15 (32765 to 34252) | 1488 |
| peg.807 | - | Resolvase-like | - | contig 15 (6452 to 6847) | 396 |
| peg.1245 | - | Tn1 transposase | - | contig 28 (741 to 1088) | 348 |
| Cl_03045 | - | Gifsy-2 prophage protein | - | contig 15 (7251 to 7544) | 294 |
| Cl_03251 | - | putative bacteriophage protein | - | contig 45 (3200 to 4171) | 972 |
| Cl_01918 | - | elements of external origin; phage-related functions and prophages | - | contig 6 (14793 to15281) | 489 |